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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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SLC39A6
solute carrier family 39 member 6
Chromosome 18 · 18q12.2
NCBI Gene: 25800Ensembl: ENSG00000141424.13HGNC: HGNC:18607UniProt: Q13433
79PubMed Papers
20Diseases
1Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transporter
CLINICAL
Clinical Trials
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
epithelial to mesenchymal transitioncell surfaceintracellular zinc ion homeostasiszinc ion transmembrane transportbreast cancerneoplasmnon-small cell lung carcinomaliver cancer
✦AI Summary

SLC39A6 is a zinc-influx transporter mediating cellular zinc homeostasis and playing a critical role in epithelial-to-mesenchymal transition (EMT). When forming a heterodimer with SLC39A10, SLC39A6 mediates zinc uptake that inactivates GSK3B, allowing SNAI1-mediated downregulation of adherence genes like CDH1 and promoting loss of cell adhesion 1. The SLC39A10-SLC39A6 heterodimer also initiates mitosis by importing zinc to trigger mitotic pathways 2. Beyond EMT, SLC39A6 participates in T-cell receptor signaling by mediating zinc uptake in activated lymphocytes 3 and regulates zinc influx necessary for oocyte meiotic progression 4. Clinically, SLC39A6 is significantly upregulated across multiple cancer types including breast, esophageal, gastric, colorectal, and liver cancers 56789. High SLC39A6 expression correlates with poor overall survival in esophageal, gastric, and liver cancers, and serves as an independent prognostic factor 678. Notably, in estrogen receptor-positive luminal breast cancer, high SLC39A6 expression associates with better prognosis 10. SLC39A6 is identified as an anoikis-related gene critical for breast cancer metastatic colonization 11. SLC39A6 represents a validated therapeutic target, with antibody-drug conjugates targeting this transporter showing cytotoxic activity in preclinical models 59.

Sources cited
1
When forming a heterodimer with SLC39A10, SLC39A6 mediates zinc uptake that inactivates GSK3B, allowing SNAI1-mediated downregulation of adherence genes like CDH1 and promoting loss of cell adhesion .
PMID: 23919497
2
The SLC39A10-SLC39A6 heterodimer also initiates mitosis by importing zinc to trigger mitotic pathways .
PMID: 32797246
3
Beyond EMT, SLC39A6 participates in T-cell receptor signaling by mediating zinc uptake in activated lymphocytes and regulates zinc influx necessary for oocyte meiotic progression .
PMID: 21422171
4
Beyond EMT, SLC39A6 participates in T-cell receptor signaling by mediating zinc uptake in activated lymphocytes and regulates zinc influx necessary for oocyte meiotic progression .
PMID: 25143461
5
Notably, in estrogen receptor-positive luminal breast cancer, high SLC39A6 expression associates with better prognosis .
PMID: 34453638
6
SLC39A6 is identified as an anoikis-related gene critical for breast cancer metastatic colonization .
PMID: 39300389
Disease Associationsⓘ20
breast cancerOpen Targets
0.11Weak
neoplasmOpen Targets
0.11Weak
non-small cell lung carcinomaOpen Targets
0.09Suggestive
liver cancerOpen Targets
0.09Suggestive
esophageal squamous cell carcinomaOpen Targets
0.08Suggestive
hepatocellular carcinomaOpen Targets
0.08Suggestive
prostate cancerOpen Targets
0.08Suggestive
small cell lung carcinomaOpen Targets
0.07Suggestive
breast neoplasmOpen Targets
0.07Suggestive
colorectal carcinomaOpen Targets
0.06Suggestive
triple-negative breast cancerOpen Targets
0.03Suggestive
cancerOpen Targets
0.03Suggestive
bipolar disorderOpen Targets
0.03Suggestive
kidney diseaseOpen Targets
0.02Suggestive
esophageal cancerOpen Targets
0.02Suggestive
carcinomaOpen Targets
0.02Suggestive
ovarian cancerOpen Targets
0.02Suggestive
neuroblastomaOpen Targets
0.02Suggestive
endometrial carcinomaOpen Targets
0.02Suggestive
pancreatic carcinomaOpen Targets
0.02Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Drug Targets1
LADIRATUZUMAB VEDOTINPhase II
Zinc transporter ZIP6 binding agent
breast cancer
Related Genes
SLC30A6Protein interaction89%SLC30A5Protein interaction87%SLC30A7Protein interaction85%SLC30A4Protein interaction76%SLC30A9Protein interaction76%SLC39A10Protein interaction76%
Tissue Expression6 tissues
Brain
100%
Ovary
58%
Heart
33%
Bone Marrow
32%
Lung
21%
Liver
15%
Gene Interaction Network
Click a node to explore
SLC39A6SLC30A6SLC30A5SLC30A7SLC30A4SLC30A9SLC39A10
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q13433
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.98LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.74 [0.56–0.98]
RankingsWhere SLC39A6 stands among ~20K protein-coding genes
  • #6,032of 20,598
    Most Researched79
  • #9,291of 17,882
    Most Constrained (LOEUF)0.98
Genes detectedSLC39A6
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
SGN-LIV1A: a novel antibody-drug conjugate targeting LIV-1 for the treatment of metastatic breast cancer.
PMID: 25253783
Mol Cancer Ther · 2014
1.00
2
Anoikis-related genes in breast cancer patients: reliable biomarker of prognosis.
PMID: 39300389
BMC Cancer · 2024
0.90
3
Investigation of the cytotoxic effects and mechanisms of the SLC39A6-targeting ADC drug BRY812 in CRC.
PMID: 40414981
Sci Rep · 2025
0.80
4
SLC39A6: a potential target for diagnosis and therapy of esophageal carcinoma.
PMID: 26444413
J Transl Med · 2015
0.70
5
Role of SLC39A6 in the development and progression of liver cancer.
PMID: 35111246
Oncol Lett · 2022
0.60