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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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SNX27
sorting nexin 27
Chromosome 1 Β· 1q21.3
NCBI Gene: 81609Ensembl: ENSG00000143376.14HGNC: HGNC:20073UniProt: A0A2R8Y8A7
127PubMed Papers
20Diseases
0Drugs
18Pathogenic Variants
FUNCTIONAL ROLE
Transporter
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
early endosomeprotein bindingphosphatidylinositol-3-phosphate bindingendosome to lysosome transportDravet syndromeGlobal developmental delayIntellectual disabilitySeizure
✦AI Summary

SNX27 (sorting nexin 27) is a metazoan-specific endosomal adaptor protein that plays a critical role in retrograde transport from endosomes to the plasma membrane, promoting recycling of internalized transmembrane proteins 1. SNX27 is unique among sorting nexins as it contains both a PX domain and a PDZ domain, enabling it to bind specifically to transmembrane proteins containing C-terminal PDZ-binding motifs 2. The protein associates with the retromer complex to prevent cargo entry into the lysosomal degradation pathway and promotes retromer-tubule based plasma membrane recycling 1. Over 100 cell surface proteins have been identified as binding partners of the SNX27-retromer complex 2. SNX27 also interacts with the WASH complex through FAM21 subunit binding, which nucleates actin filaments to establish endosomal recycling domains 3. In neurons, SNX27 is particularly important for trafficking glutamate receptors and synaptic proteins, with overexpression enhancing synaptic transmission and cognitive function 4. The protein regulates AMPA receptor trafficking both directly and indirectly through sorting of the synaptic adhesion molecule LRFN2 5. Additionally, SNX27 functions in immune cell polarization, translocating to the immunological synapse and interacting with diacylglycerol kinase ΞΆ to modulate T-cell activation 6. Dysregulation of SNX27 is linked to neurological diseases including Down syndrome and Alzheimer's disease 1.

Sources cited
1
SNX27 is a metazoan-specific sorting nexin required for endosomal recycling and associated with neurological diseases
PMID: 33937239
2
SNX27 contains unique PDZ domain and associates with retromer complex, with over 100 identified binding partners
PMID: 36612066
3
SNX27 interacts with WASH complex through FAM21 subunit to establish endosomal recycling domains
PMID: 39116126
4
SNX27 overexpression enhances synaptic transmission and cognitive function through glutamate receptor modulation
PMID: 33330482
5
SNX27 regulates AMPA receptor trafficking indirectly through sorting of synaptic adhesion molecule LRFN2
PMID: 34251337
6
SNX27 functions in immune cell polarization and T-cell activation through interaction with diacylglycerol kinase ΞΆ
PMID: 32549284
Disease Associationsβ“˜20
Dravet syndromeOpen Targets
0.55Moderate
Global developmental delayOpen Targets
0.42Moderate
Intellectual disabilityOpen Targets
0.42Moderate
Generalized hypotoniaOpen Targets
0.42Moderate
SeizureOpen Targets
0.42Moderate
genetic disorderOpen Targets
0.19Weak
atopic eczemaOpen Targets
0.19Weak
Blackfan-Diamond anemiaOpen Targets
0.09Suggestive
hepatocellular carcinomaOpen Targets
0.07Suggestive
pulmonary arterial hypertensionOpen Targets
0.07Suggestive
Hereditary persistence of fetal hemoglobin - beta-thalassemiaOpen Targets
0.07Suggestive
hereditary persistence of fetal hemoglobin-sickle cell disease syndromeOpen Targets
0.07Suggestive
inosine triphosphatase deficiencyOpen Targets
0.07Suggestive
primary familial polycythemia due to EPO receptor mutationOpen Targets
0.07Suggestive
alpha thalassemia-intellectual disability syndrome type 1Open Targets
0.07Suggestive
Alpha-thalassemia - intellectual disability syndrome linked to chromosome 16Open Targets
0.07Suggestive
Alpha-thalassemia - myelodysplastic syndromeOpen Targets
0.06Suggestive
alpha-thalassemia-myelodysplastic syndromeOpen Targets
0.06Suggestive
Autosomal dominant methemoglobinemiaOpen Targets
0.06Suggestive
hemoglobin E-beta-thalassemia syndromeOpen Targets
0.06Suggestive
Pathogenic Variants18
NM_001330723.2(SNX27):c.703C>T (p.Arg235Ter)Pathogenic
not provided|Severe myoclonic epilepsy in infancy
β˜…β˜…β˜†β˜†2022β†’ Residue 235
NM_001330723.2(SNX27):c.265dup (p.Ala89fs)Pathogenic
Severe myoclonic epilepsy in infancy
β˜…β˜†β˜†β˜†2025β†’ Residue 89
NM_001330723.2(SNX27):c.556del (p.Tyr186fs)Pathogenic
Severe myoclonic epilepsy in infancy
β˜…β˜†β˜†β˜†2024β†’ Residue 186
NM_001330723.2(SNX27):c.1240-2A>GLikely pathogenic
Severe myoclonic epilepsy in infancy
β˜…β˜†β˜†β˜†2024
NM_001330723.2(SNX27):c.1492C>T (p.Arg498Ter)Pathogenic
Severe myoclonic epilepsy in infancy
β˜…β˜†β˜†β˜†2024β†’ Residue 498
NM_001330723.2(SNX27):c.1426C>T (p.Arg476Ter)Pathogenic
Severe myoclonic epilepsy in infancy
β˜…β˜†β˜†β˜†2024β†’ Residue 476
NM_001330723.2(SNX27):c.1072C>T (p.Arg358Ter)Pathogenic
Severe myoclonic epilepsy in infancy
β˜…β˜†β˜†β˜†2024β†’ Residue 358
NM_001330723.2(SNX27):c.1474C>T (p.Arg492Ter)Pathogenic
Severe myoclonic epilepsy in infancy
β˜…β˜†β˜†β˜†2023β†’ Residue 492
NM_001330723.2(SNX27):c.652C>T (p.Arg218Ter)Pathogenic
Severe myoclonic epilepsy in infancy
β˜…β˜†β˜†β˜†2022β†’ Residue 218
NM_001330723.2(SNX27):c.1216_1217dup (p.Glu407fs)Pathogenic
Severe myoclonic epilepsy in infancy
β˜…β˜†β˜†β˜†2021β†’ Residue 407
NM_001330723.2(SNX27):c.1431G>A (p.Trp477Ter)Pathogenic
Severe myoclonic epilepsy in infancy
β˜…β˜†β˜†β˜†2021β†’ Residue 477
NM_001330723.2(SNX27):c.977dup (p.His326fs)Pathogenic
Severe myoclonic epilepsy in infancy
β˜…β˜†β˜†β˜†2021β†’ Residue 326
NM_001330723.2(SNX27):c.782dup (p.Leu262fs)Likely pathogenic
See cases
β˜…β˜†β˜†β˜†2021β†’ Residue 262
NM_001330723.2(SNX27):c.989G>A (p.Arg330His)Likely pathogenic
See cases
β˜…β˜†β˜†β˜†2021β†’ Residue 330
NM_001330723.2(SNX27):c.873del (p.Lys293fs)Pathogenic
Severe myoclonic epilepsy in infancy
β˜…β˜†β˜†β˜†2019β†’ Residue 293
NM_001330723.2(SNX27):c.629_630del (p.Glu210fs)Pathogenic
Severe myoclonic epilepsy in infancy
β˜…β˜†β˜†β˜†2019β†’ Residue 210
NM_001330723.2(SNX27):c.1218C>G (p.Tyr406Ter)Pathogenic
Severe myoclonic epilepsy in infancy
β˜…β˜†β˜†β˜†2017β†’ Residue 406
NM_001330723.2(SNX27):c.1356dup (p.Leu453fs)Pathogenic
Severe myoclonic epilepsy in infancy
β˜…β˜†β˜†β˜†2017β†’ Residue 453
View on ClinVar β†—
Related Genes
WASHC1Protein interaction100%WASHC2CProtein interaction100%OTULINProtein interaction99%EEA1Protein interaction99%ANKRD50Protein interaction98%ADRB2Protein interaction96%
Tissue Expression6 tissues
Brain
100%
Lung
65%
Ovary
55%
Heart
50%
Liver
46%
Bone Marrow
35%
Gene Interaction Network
Click a node to explore
SNX27WASHC1WASHC2COTULINEEA1ANKRD50ADRB2
PROTEIN STRUCTURE
Preparing viewer…
PDB7E0B Β· 1.29 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.52Moderately Constrained
pLIβ“˜
0.93Intolerant
Observed/Expected LoF0.36 [0.25–0.52]
RankingsWhere SNX27 stands among ~20K protein-coding genes
  • #3,703of 20,598
    Most Researched127 Β· top quartile
  • #2,278of 5,498
    Most Pathogenic Variants18
  • #3,208of 17,882
    Most Constrained (LOEUF)0.52 Β· top quartile
Genes detectedSNX27
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Endosomal Sorting Protein SNX27 and Its Emerging Roles in Human Cancers.
PMID: 36612066
Cancers (Basel) Β· 2022
1.00
2
PCSK9 Promotes LDLR Degradation by Preventing SNX17-Mediated LDLR Recycling.
PMID: 40071387
Circulation Β· 2025
0.90
3
Toward Understanding the Molecular Role of SNX27/Retromer in Human Health and Disease.
PMID: 33937239
Front Cell Dev Biol Β· 2021
0.80
4
Sorting nexin-27 regulates AMPA receptor trafficking through the synaptic adhesion protein LRFN2.
PMID: 34251337
Elife Β· 2021
0.70
5
Structural basis for coupling of the WASH subunit FAM21 with the endosomal SNX27-Retromer complex.
PMID: 39116126
Proc Natl Acad Sci U S A Β· 2024
0.60