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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
SOX17
SRY-box transcription factor 17
Chromosome 8 Β· 8q11.23
NCBI Gene: 64321Ensembl: ENSG00000164736.6HGNC: HGNC:18122UniProt: Q9H6I2
112PubMed Papers
22Diseases
0Drugs
7Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingbeta-catenin bindingnegative regulation of canonical Wnt signaling pathwayRNA polymerase II-specific DNA-binding transcription factor bindingfamilial vesicoureteral refluxvesicoureteral reflux 3pulmonary arterial hypertensionheritable pulmonary arterial hypertension
✦AI Summary

SOX17 is a SRY-box transcription factor that functions as a key developmental regulator binding DNA sequences containing AACAAT or AACAAAG motifs 1. During embryonic development, SOX17 is essential for definitive gut endoderm formation, cardiac tube looping, and vascular development 2. It regulates fetal hematopoietic stem cell generation and germ cell specification 3, while antagonizing canonical Wnt signaling through CTNNB1 degradation. Beyond developmental roles, SOX17 plays a critical function in early colorectal cancer progression by suppressing interferon-Ξ³ responses and MHC-I expression, enabling immune evasion of pre-malignant adenomas 4. Clinically, SOX17 variants contribute significantly to pulmonary arterial hypertension (PAH) pathogenesis. Genome-wide association studies identified SOX17 locus variants (rs10103692, rs13266183) strongly associated with PAH susceptibility, with functional evidence showing risk variants alter endothelial enhancer activity 5. Rare deleterious SOX17 mutations account for approximately 3.2% of PAH cases associated with congenital heart disease and 0.7% of idiopathic PAH 6. These findings establish SOX17 as both a developmental master regulator and a disease-critical transcription factor with implications for cancer immunology and cardiovascular pathology.

Sources cited
1
SOX17 acts as a transcription regulator binding target promoter DNA sequences
PMID: 33952808
2
SOX17 is essential for endoderm specification and intestinal tissue development from pluripotent stem cells
PMID: 22082986
3
SOX17 is the key regulator of human primordial germ cell specification
PMID: 25543152
4
SOX17 enables immune evasion of early colorectal adenomas by suppressing IFNΞ³ response and reducing MHC-I expression
PMID: 38418875
5
SOX17 locus variants (rs10103692, rs13266183) are genome-wide significantly associated with pulmonary arterial hypertension, with risk variants altering endothelial enhancer activity
PMID: 30527956
6
Rare deleterious SOX17 variants contribute to approximately 3.2% of PAH-CHD cases and 0.7% of idiopathic/familial PAH
PMID: 30029678
Disease Associationsβ“˜22
familial vesicoureteral refluxOpen Targets
0.67Moderate
vesicoureteral reflux 3Open Targets
0.60Moderate
pulmonary arterial hypertensionOpen Targets
0.49Moderate
heritable pulmonary arterial hypertensionOpen Targets
0.47Moderate
endometrial cancerOpen Targets
0.39Weak
vesicoureteral refluxOpen Targets
0.37Weak
brain aneurysmOpen Targets
0.36Weak
gestational diabetesOpen Targets
0.25Weak
aneurysmOpen Targets
0.21Weak
genetic disorderOpen Targets
0.19Weak
liver diseaseOpen Targets
0.19Weak
ovarian carcinomaOpen Targets
0.19Weak
medical procedureOpen Targets
0.19Weak
Increased total eosinophil countOpen Targets
0.17Weak
HypercholesterolemiaOpen Targets
0.16Weak
metabolic diseaseOpen Targets
0.13Weak
Tendon ruptureOpen Targets
0.13Weak
response to statinOpen Targets
0.13Weak
body weight gainOpen Targets
0.13Weak
Abruptio PlacentaeOpen Targets
0.13Weak
Pulmonary hypertension, primary, 7UniProt
Vesicoureteral reflux 3UniProt
Pathogenic Variants7
NM_022454.4(SOX17):c.499_520del (p.Leu167fs)Pathogenic
not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 167
NM_022454.4(SOX17):c.413G>C (p.Arg138Pro)Likely pathogenic
Pulmonary hypertension, primary, 7
β˜…β˜†β˜†β˜†2025β†’ Residue 138
NM_022454.4(SOX17):c.209G>A (p.Arg70Gln)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 70
NM_022454.4(SOX17):c.404A>G (p.Tyr135Cys)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 135
NM_022454.4(SOX17):c.245A>G (p.Glu82Gly)Likely pathogenic
Vesicoureteral reflux 3
β˜…β˜†β˜†β˜†2022β†’ Residue 82
NM_022454.4(SOX17):c.314C>A (p.Ser105Ter)Pathogenic
Pulmonary arterial hypertension
β˜…β˜†β˜†β˜†2022β†’ Residue 105
NM_022454.4(SOX17):c.208C>G (p.Arg70Gly)Likely pathogenic
Sox17- related disorders
β˜…β˜†β˜†β˜†β†’ Residue 70
View on ClinVar β†—
Related Genes
TCF7Protein interaction95%TCF7L2Protein interaction95%TCF7L1Protein interaction95%CTNNB1Protein interaction95%ESRRBProtein interaction87%GATA4Protein interaction87%
Tissue Expression6 tissues
Heart
100%
Lung
69%
Ovary
35%
Liver
18%
Brain
9%
Bone Marrow
0%
Gene Interaction Network
Click a node to explore
SOX17TCF7TCF7L2TCF7L1CTNNB1ESRRBGATA4
PROTEIN STRUCTURE
Preparing viewer…
PDB4A3N Β· 2.40 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.61LoF Tolerant
pLIβ“˜
0.86Intermediate
Observed/Expected LoF0.27 [0.13–0.61]
RankingsWhere SOX17 stands among ~20K protein-coding genes
  • #4,247of 20,598
    Most Researched112 Β· top quartile
  • #3,181of 5,498
    Most Pathogenic Variants7
  • #4,275of 17,882
    Most Constrained (LOEUF)0.61 Β· top quartile
Genes detectedSOX17
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
SOX17 enables immune evasion of early colorectal adenomas and cancers.
PMID: 38418875
Nature Β· 2024
1.00
2
Single-cell transcriptomics identifies gene expression networks driving differentiation and tumorigenesis in the human fallopian tube.
PMID: 33852846
Cell Rep Β· 2021
0.90
3
Identification of rare sequence variation underlying heritable pulmonary arterial hypertension.
PMID: 29650961
Nat Commun Β· 2018
0.80
4
Highly cooperative chimeric super-SOX induces naive pluripotency across species.
PMID: 38141611
Cell Stem Cell Β· 2024
0.70
5
SOX17 is a critical specifier of human primordial germ cell fate.
PMID: 25543152
Cell Β· 2015
0.60