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GeneE
27 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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SPAST
spastin
Chromosome 2 Β· 2p22.3
NCBI Gene: 6683Ensembl: ENSG00000021574.15HGNC: HGNC:11233UniProt: A0A2R8Y4I8
240PubMed Papers
21Diseases
0Drugs
647Pathogenic Variants
RESEARCH IMPACT
TrendingVariant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
mitotic cytokinesisendoplasmic reticulummicrotubule cytoskeletonmidbodyAutosomal dominant spastic paraplegia type 4hereditary spastic paraplegia 4hereditary spastic paraplegiaSpastic paraplegia
✦AI Summary

SPAST encodes spastin, a microtubule-severing AAA-ATPase essential for axonal organization and synaptic patterning. Spastin locally amplifies microtubule polymerization dynamics to enable precise presynaptic cargo delivery and synapse formation along axons 1. The protein is transcriptionally regulated by NRF1 and SOX11, while miR-96 and miR-182 negatively regulate SPAST expression, indicating that stoichiometric spastin levels are critical for proper function 2. SPAST mutations cause spastic paraplegia type 4 (SPG4), the most common hereditary spastic paraplegia, representing 9.2% of hereditary spastic paraplegia cases 3. Mutations typically follow autosomal dominant inheritance but can present as severe early-onset complicated forms with dystonia, epilepsy, and cognitive decline, particularly with the recurrent p.Arg499His variant 45. Emerging evidence indicates biallelic SPAST variants cause severe early-onset encephalopathy resembling cerebral palsy 6. Pathogenic mechanisms involve both haploinsufficiency and potential gain-of-function effects, with mutant spastin proteins potentially causing a second hit in vulnerable corticospinal tracts 7. Cellular dysfunction includes reduced spastin levels, mitochondrial fragmentation, and abnormal membrane morphology 6. SPAST variants are detected in approximately 26% of Mendelian disorders identified in cerebral palsy patients 8.

Sources cited
1
Spastin locally amplifies microtubule polymerization to pattern axons for presynaptic cargo delivery
PMID: 38554708
2
SPAST transcription is positively regulated by NRF1 and SOX11; miR-96 and miR-182 negatively regulate SPAST; stoichiometric levels of spastin are necessary for biological function
PMID: 22574173
3
SPAST is the most frequently mutated gene in hereditary spastic paraplegia, representing 9.2% of index cases
PMID: 34983064
4
De novo SPAST variants cause early-onset severe complex hereditary spastic paraplegia with motor delay, spasticity, dystonia, epilepsy, and neurogenic bladder dysfunction
PMID: 36103453
5
The recurrent p.Arg499His mutation in SPAST is associated with infantile-onset complicated spastic paraplegia with ataxia and epilepsy
PMID: 34753439
6
SPAST mutations may cause disease through haploinsufficiency that makes corticospinal tracts vulnerable to a second hit
PMID: 31108029
7
Biallelic SPAST variants cause severe early-onset encephalopathy; pathogenic mechanisms include reduced spastin levels, mitochondrial fragmentation, and abnormal filopodia morphology
PMID: 41000004
8
SPAST variants are identified in approximately 26% of Mendelian disorders in cerebral palsy patients
PMID: 35076175
Disease Associationsβ“˜21
Autosomal dominant spastic paraplegia type 4Open Targets
0.87Strong
hereditary spastic paraplegia 4Open Targets
0.81Strong
hereditary spastic paraplegiaOpen Targets
0.71Strong
Spastic paraplegiaOpen Targets
0.62Moderate
genetic disorderOpen Targets
0.52Moderate
Rare hereditary ataxiaOpen Targets
0.51Moderate
hereditary ataxiaOpen Targets
0.45Moderate
Spastic paraparesisOpen Targets
0.44Moderate
Tip-toe gaitOpen Targets
0.43Moderate
SpasticityOpen Targets
0.41Moderate
Neurodevelopmental disorderOpen Targets
0.40Weak
cerebral palsyOpen Targets
0.39Weak
spastic diplegiaOpen Targets
0.37Weak
developmental disorder of mental healthOpen Targets
0.37Weak
paraplegiaOpen Targets
0.35Weak
SeizureOpen Targets
0.34Weak
Abnormal central motor functionOpen Targets
0.34Weak
FatigueOpen Targets
0.34Weak
Flexion contractureOpen Targets
0.34Weak
Pes valgusOpen Targets
0.34Weak
Spastic paraplegia 4, autosomal dominantUniProt
Pathogenic Variants647
NM_014946.4(SPAST):c.1493+2_1493+5delPathogenic
Hereditary spastic paraplegia 4|Hereditary spastic paraplegia|not provided
β˜…β˜…β˜†β˜†2026
NM_014946.4(SPAST):c.1634C>T (p.Ser545Leu)Pathogenic
Hereditary spastic paraplegia 4
β˜…β˜…β˜†β˜†2026β†’ Residue 545
NM_014946.4(SPAST):c.1291C>T (p.Arg431Ter)Pathogenic
Hereditary spastic paraplegia 4|not provided|Hereditary spastic paraplegia
β˜…β˜…β˜†β˜†2026β†’ Residue 431
NM_014946.4(SPAST):c.1378C>T (p.Arg460Cys)Pathogenic
Hereditary spastic paraplegia 4|not provided|Hereditary spastic paraplegia
β˜…β˜…β˜†β˜†2026β†’ Residue 460
NM_014946.4(SPAST):c.1676G>A (p.Gly559Asp)Pathogenic
Hereditary spastic paraplegia 4|not provided|Hereditary spastic paraplegia
β˜…β˜…β˜†β˜†2025β†’ Residue 559
NM_014946.4(SPAST):c.1245del (p.Lys414_Tyr415insTer)Pathogenic
Hereditary spastic paraplegia 4|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 414
NM_014946.4(SPAST):c.1494-2A>CPathogenic
Hereditary spastic paraplegia 4|not provided
β˜…β˜…β˜†β˜†2025
NM_014946.4(SPAST):c.867_868del (p.His289fs)Pathogenic
not provided|Hereditary spastic paraplegia 4
β˜…β˜…β˜†β˜†2025β†’ Residue 289
NM_014946.4(SPAST):c.806dup (p.Tyr269Ter)Pathogenic
Hereditary spastic paraplegia 4|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 269
NM_014946.4(SPAST):c.746C>G (p.Ser249Ter)Pathogenic
not provided|Hereditary spastic paraplegia|Hereditary spastic paraplegia 4
β˜…β˜…β˜†β˜†2025β†’ Residue 249
NM_014946.4(SPAST):c.1495C>T (p.Arg499Cys)Pathogenic
Hereditary spastic paraplegia 4|not provided|Spastic paraparesis|Hereditary spastic paraplegia
β˜…β˜…β˜†β˜†2025β†’ Residue 499
NM_014946.4(SPAST):c.871-1G>CPathogenic
not provided|Hereditary spastic paraplegia 4
β˜…β˜…β˜†β˜†2025
NM_014946.4(SPAST):c.1130G>A (p.Gly377Glu)Pathogenic
not provided|Hereditary spastic paraplegia 4
β˜…β˜…β˜†β˜†2025β†’ Residue 377
NM_014946.4(SPAST):c.838C>T (p.Gln280Ter)Pathogenic
not provided|Hereditary spastic paraplegia 4
β˜…β˜…β˜†β˜†2025β†’ Residue 280
NM_014946.4(SPAST):c.1493+2T>APathogenic
not provided|Hereditary spastic paraplegia 4
β˜…β˜…β˜†β˜†2025
NM_014946.4(SPAST):c.1496G>A (p.Arg499His)Pathogenic
Hereditary spastic paraplegia 4|Inborn genetic diseases|not provided|Hereditary spastic paraplegia|Abnormal central motor function|SPAST-related disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 499
NM_014946.4(SPAST):c.1741C>T (p.Arg581Ter)Pathogenic
Hereditary spastic paraplegia 4|Hereditary spastic paraplegia|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 581
NM_014946.4(SPAST):c.1276C>T (p.Leu426Phe)Pathogenic
Flexion contracture;Spastic diplegia;Pes valgus;Spasticity;Tip-toe gait|Hereditary spastic paraplegia 4|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 426
NM_014946.4(SPAST):c.166_175del (p.Tyr55_Pro56insTer)Pathogenic
Hereditary spastic paraplegia 4|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 55
NM_014946.4(SPAST):c.1840dup (p.Thr614fs)Pathogenic
Hereditary spastic paraplegia 4
β˜…β˜…β˜†β˜†2025β†’ Residue 614
View on ClinVar β†—
Related Genes
NUP133Protein interaction100%NUP43Protein interaction100%CHMP3Protein interaction100%CHMP1BProtein interaction99%CHMP4AProtein interaction99%SPG11Protein interaction99%
Tissue Expression6 tissues
Brain
100%
Bone Marrow
70%
Ovary
35%
Liver
32%
Heart
27%
Lung
23%
Gene Interaction Network
Click a node to explore
SPASTNUP133NUP43CHMP3CHMP1BCHMP4ASPG11
PROTEIN STRUCTURE
Preparing viewer…
PDB7S7J Β· 1.15 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.69LoF Tolerant
pLIβ“˜
0.11Tolerant
Observed/Expected LoF0.44 [0.29–0.69]
RankingsWhere SPAST stands among ~20K protein-coding genes
  • #1,637of 20,598
    Most Researched240 Β· top 10%
  • #74of 5,498
    Most Pathogenic Variants647 Β· top 5%
  • #5,197of 17,882
    Most Constrained (LOEUF)0.69
Genes detectedSPAST
Sources retrieved27 papers
Response timeβ€”
πŸ“„ Sources
27β–Ό
1
Clinical and genetic spectra of 1550 index patients with hereditary spastic paraplegia.
PMID: 34983064
Brain Β· 2022
1.00
2
Early-Onset and Severe Complex Hereditary Spastic Paraplegia Caused by De Novo Variants in SPAST.
PMID: 36103453
Mov Disord Β· 2022
0.90
3
The Genetic Landscape of Hereditary Spastic Paraplegia in Greece.
PMID: 41277402
Clin Genet Β· 2026
0.84
4
Copy number variations in SPAST and ATL1 are rare among Brazilians.
PMID: 36537231
Clin Genet Β· 2023
0.80
5
Mendelian etiologies identified with whole exome sequencing in cerebral palsy.
PMID: 35076175
Ann Clin Transl Neurol Β· 2022
0.80