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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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SPDYA
speedy/RINGO cell cycle regulator family member A
Chromosome 2 · 2p23.2
NCBI Gene: 245711Ensembl: ENSG00000163806.16HGNC: HGNC:30613UniProt: A0A384MTT5
33PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingprotein kinase bindingprotein kinase activator activityG1/S transition of mitotic cell cyclecervical carcinomacoronary atherosclerosistriple-negative breast cancerazoospermia
✦AI Summary

SPDYA (Speedy A) is a cell cycle regulator that primarily functions as a CDK activator protein. It binds and activates CDK1 and CDK2 to regulate G1/S phase transition 1, inducing conformational changes in CDK2's T-loop that facilitate substrate binding without requiring phosphorylation 2. Beyond canonical cell cycle control, SPDYA mediates cell survival during DNA damage through CDK2 activation 3. Mechanistically, SPDYA functions as a non-cyclin CDK activator, distinct from traditional cyclins 4. In neural stem cells, elevated SPDYA (also called SPY1) activates quiescent cells, promoting stemness and self-renewal while suppressing differentiation 5. During male meiosis, SPDYA interacts directly with SUN1 at the nuclear envelope to form telomere supramolecular architecture critical for homologous chromosome 2 and synapsis in prophase I 67. Disease relevance includes cancer contexts: SPDYA hypermethylation is a biomarker distinguishing hepatocellular carcinoma from normal liver tissue 8, and elevated SPDYA in glioblastoma correlates with increased oncogenic transformation risk 5. SPDYA also activates ERK1/2 independently of MEK, promoting tamoxifen resistance in breast cancer 9. Additionally, SPDYA appears as a fusion partner with ALK in select lung adenocarcinomas 10.

Sources cited
1
SPDYA binds and activates CDK1 and CDK2 to regulate G1/S phase transition
PMID: 12972555
2
SPDYA induces conformational changes in CDK2's T-loop facilitating substrate binding without phosphorylation
PMID: 28666995
3
SPDYA mediates cell survival during DNA damage through CDK2 activation
PMID: 12839962
4
SPDYA is a non-cyclin CDK activator, part of RINGO/Speedy protein family
PMID: 16488127
5
SPDYA (SPY1) activates quiescent neural stem cells and elevated levels correlate with glioblastoma and oncogenic transformation
PMID: 41483811
6
SPDYA interacts with SUN1 at the nuclear envelope to form telomere architecture critical for meiotic prophase I
PMID: 34039995
7
SPDYA-CDK2 complex is critical for controlling telomeric activities during male meiosis
PMID: 38511802
8
SPDYA hypermethylation is significantly higher in hepatocellular carcinoma tissue and serves as a biomarker
PMID: 22457049
9
SPDYA activates ERK1/2 independently of MEK, promoting tamoxifen resistance in breast cancer
PMID: 28423577
10
SPDYA appears as a non-canonical fusion partner with ALK in select lung adenocarcinomas
PMID: 29327716
Disease Associationsⓘ20
cervical carcinomaOpen Targets
0.30Weak
coronary atherosclerosisOpen Targets
0.29Weak
triple-negative breast cancerOpen Targets
0.21Weak
azoospermiaOpen Targets
0.08Suggestive
amyotrophic lateral sclerosisOpen Targets
0.08Suggestive
glioblastoma multiformeOpen Targets
0.08Suggestive
colorectal carcinomaOpen Targets
0.07Suggestive
neoplasmOpen Targets
0.07Suggestive
partial chromosome Y deletionOpen Targets
0.06Suggestive
neuroblastomaOpen Targets
0.06Suggestive
spinocerebellar ataxia type 32Open Targets
0.06Suggestive
Isolated follicle stimulating hormone deficiencyOpen Targets
0.05Suggestive
primary ovarian insufficiencyOpen Targets
0.05Suggestive
isochromosomy YpOpen Targets
0.05Suggestive
spermatogenic failure 50Open Targets
0.05Suggestive
spermatogenic failure 57Open Targets
0.05Suggestive
spermatogenic failure 25Open Targets
0.05Suggestive
spermatogenic failure, X-linked, 2Open Targets
0.05Suggestive
congenital bilateral absence of vas deferensOpen Targets
0.05Suggestive
partial androgen insensitivity syndromeOpen Targets
0.05Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
CDC25CProtein interaction100%SUN1Protein interaction100%CDK2Protein interaction98%CDKN1BProtein interaction98%CDK1Protein interaction98%NFYAProtein interaction82%
Tissue Expression6 tissues
Bone Marrow
100%
Ovary
83%
Liver
44%
Brain
42%
Lung
34%
Heart
16%
Gene Interaction Network
Click a node to explore
SPDYACDC25CSUN1CDK2CDKN1BCDK1NFYA
PROTEIN STRUCTURE
Preparing viewer…
PDB5UQ2 · 2.70 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.59Moderately Constrained
pLIⓘ
0.86Intermediate
Observed/Expected LoF0.32 [0.19–0.59]
RankingsWhere SPDYA stands among ~20K protein-coding genes
  • #11,422of 20,598
    Most Researched33
  • #3,952of 17,882
    Most Constrained (LOEUF)0.59 · top quartile
Genes detectedSPDYA
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Spy1/SpeedyA accelerates neuroblastoma.
PMID: 25216512
Oncotarget · 2014
1.00
2
The SUN1-SPDYA interaction plays an essential role in meiosis prophase I.
PMID: 34039995
Nat Commun · 2021
0.90
3
Atypical cell cycle regulation over neural stem cell expansion.
PMID: 41483811
Stem Cell Reports · 2026
0.80
4
Genomic heterogeneity of ALK fusion breakpoints in non-small-cell lung cancer.
PMID: 29327716
Mod Pathol · 2018
0.70
5
Genome-wide analysis of DNA methylation identifies novel cancer-related genes in hepatocellular carcinoma.
PMID: 22457049
Tumour Biol · 2012
0.60