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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
SUCLG1
succinate-CoA ligase GDP/ADP-forming subunit alpha
Chromosome 2 Β· 2p11.2
NCBI Gene: 8802Ensembl: ENSG00000163541.13HGNC: HGNC:11449UniProt: P53597
96PubMed Papers
21Diseases
0Drugs
32Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
RNA bindingmalate metabolic processtoxic metabolite repaircatalytic complexmitochondrial DNA depletion syndrome 9Fatal infantile lactic acidosis with methylmalonic aciduriamitochondrial DNA depletion syndromeneurodegenerative disease
✦AI Summary

SUCLG1 encodes the alpha subunit of succinyl-CoA synthetase, a TCA cycle enzyme catalyzing the only substrate-level phosphorylation step by coupling succinyl-CoA hydrolysis to ATP or GTP synthesis 1. The alpha subunit binds coenzyme A and phosphate substrates, while beta subunits determine nucleotide specificity and succinate binding 2. SUCLG1 also exhibits itaconyl- and malyl-CoA synthetase activities 2. Beyond canonical TCA function, SUCLG1 regulates mitochondrial biogenesis by restricting succinyl-CoA levels to suppress lysine succinylation of mitochondrial RNA polymerase (POLRMT), maintaining mtDNA transcription 3. Additionally, SUCLG1 controls histone succinylation levels, with SUCLG1 depletion causing histone hypersuccinylation that impairs BRD4-mediated oncogene expression in acute myeloid leukemia 4. SUCLG1 promotes aerobic respiration and mitochondrial quality control in tumor progression 5. Pathogenic SUCLG1 variants cause mitochondrial DNA depletion syndrome 9 (MDDS9), characterized by impaired mtDNA synthesis leading to encephalomyopathic presentations with hypotonia and neurological features 67. SUCLG1 mutations are associated with Leigh syndrome, a severe pediatric mitochondrial disease with variable prognosis 8. Post-translational Ξ²-hydroxybutyrylation of SUCLG1 enhances its enzymatic activity and ATP production, relevant to metabolic interventions in neurodegeneration 9.

Sources cited
1
SUCLG1 catalyzes substrate-level phosphorylation in TCA cycle, coupling succinyl-CoA hydrolysis to ATP/GTP synthesis
PMID: 34492704
2
SUCLG1 alpha subunit binds CoA and phosphate; has itaconyl- and malyl-CoA synthetase activities
PMID: 40108300
3
SUCLG1 restricts succinyl-CoA to suppress POLRMT succinylation, maintaining mtDNA transcription and mitochondrial biogenesis
PMID: 38649537
4
SUCLG1 depletion causes histone hypersuccinylation that impairs BRD4-mediated leukemogenic gene transcription
PMID: 40811057
5
SUCLG1 promotes aerobic respiration, mitochondrial fusion, and tumor cell proliferation
PMID: 39749698
6
SUCLG1 mutations cause mtDNA depletion syndrome with encephalomyopathic presentations
PMID: 23385875
7
SUCLG1 is involved in maintaining balanced mitochondrial nucleotide pools for mtDNA synthesis
PMID: 28215579
8
SUCLG1 mutations are associated with Leigh syndrome, a severe pediatric mitochondrial disease
PMID: 35094435
9
SUCLG1 Ξ²-hydroxybutyrylation enhances enzymatic activity and ATP production
PMID: 39411885
10
SUCLG1 mutations cause mitochondrial encephalomyopathy with variable clinical phenotypes
PMID: 33230783
Disease Associationsβ“˜21
mitochondrial DNA depletion syndrome 9Open Targets
0.80Strong
Fatal infantile lactic acidosis with methylmalonic aciduriaOpen Targets
0.65Moderate
mitochondrial DNA depletion syndromeOpen Targets
0.55Moderate
neurodegenerative diseaseOpen Targets
0.52Moderate
post term pregnancyOpen Targets
0.31Weak
ovarian neoplasmOpen Targets
0.28Weak
lysosomal storage diseaseOpen Targets
0.25Weak
genetic disorderOpen Targets
0.19Weak
DNA methylationOpen Targets
0.19Weak
Leigh syndromeOpen Targets
0.19Weak
alcohol drinkingOpen Targets
0.13Weak
hypertrophic cardiomyopathyOpen Targets
0.13Weak
cholelithiasisOpen Targets
0.13Weak
ProptosisOpen Targets
0.13Weak
HypocalcemiaOpen Targets
0.12Weak
ovarian dysfunctionOpen Targets
0.12Weak
bipolar disorderOpen Targets
0.11Weak
leukemiaOpen Targets
0.07Suggestive
Abnormality of the integumentOpen Targets
0.06Suggestive
hepatocellular carcinomaOpen Targets
0.04Suggestive
Mitochondrial DNA depletion syndrome 9UniProt
Pathogenic Variants32
NM_003849.4(SUCLG1):c.825+1G>ALikely pathogenic
Mitochondrial DNA depletion syndrome 9|Melanoma
β˜…β˜…β˜†β˜†2025
NM_003849.4(SUCLG1):c.626C>A (p.Ala209Glu)Pathogenic
not provided|Mitochondrial DNA depletion syndrome 9
β˜…β˜…β˜†β˜†2024β†’ Residue 209
NM_003849.4(SUCLG1):c.937G>T (p.Glu313Ter)Pathogenic
Mitochondrial DNA depletion syndrome 9
β˜…β˜†β˜†β˜†2025β†’ Residue 313
NM_003849.4(SUCLG1):c.319-1G>ALikely pathogenic
Mitochondrial DNA depletion syndrome 9
β˜…β˜†β˜†β˜†2025
NM_003849.4(SUCLG1):c.390_393del (p.Asn130fs)Pathogenic
Mitochondrial DNA depletion syndrome 9
β˜…β˜†β˜†β˜†2025β†’ Residue 130
NM_003849.4(SUCLG1):c.220C>T (p.Gln74Ter)Pathogenic
Mitochondrial DNA depletion syndrome 9
β˜…β˜†β˜†β˜†2025β†’ Residue 74
NM_003849.4(SUCLG1):c.583_586del (p.Arg195fs)Pathogenic
Mitochondrial DNA depletion syndrome 9
β˜…β˜†β˜†β˜†2025β†’ Residue 195
NM_003849.4(SUCLG1):c.199C>T (p.Gln67Ter)Pathogenic
Mitochondrial DNA depletion syndrome 9
β˜…β˜†β˜†β˜†2024β†’ Residue 67
NM_003849.4(SUCLG1):c.814C>T (p.Gln272Ter)Pathogenic
Mitochondrial DNA depletion syndrome 9
β˜…β˜†β˜†β˜†2024β†’ Residue 272
NM_003849.4(SUCLG1):c.460C>T (p.Arg154Ter)Pathogenic
Mitochondrial DNA depletion syndrome 9
β˜…β˜†β˜†β˜†2024β†’ Residue 154
NM_003849.4(SUCLG1):c.445C>T (p.Gln149Ter)Pathogenic
Mitochondrial DNA depletion syndrome 9
β˜…β˜†β˜†β˜†2023β†’ Residue 149
NM_003849.4(SUCLG1):c.169_170del (p.Lys57fs)Pathogenic
Mitochondrial DNA depletion syndrome 9
β˜…β˜†β˜†β˜†2023β†’ Residue 57
NM_003849.4(SUCLG1):c.835del (p.Ser279fs)Pathogenic
Mitochondrial DNA depletion syndrome 9
β˜…β˜†β˜†β˜†2023β†’ Residue 279
NM_003849.4(SUCLG1):c.787G>A (p.Glu263Lys)Likely pathogenic
Mitochondrial DNA depletion syndrome 9
β˜…β˜†β˜†β˜†2023β†’ Residue 263
NM_003849.4(SUCLG1):c.673+1G>CLikely pathogenic
Mitochondrial DNA depletion syndrome 9
β˜…β˜†β˜†β˜†2023
NM_003849.4(SUCLG1):c.458T>A (p.Val153Glu)Pathogenic
Mitochondrial DNA depletion syndrome 9
β˜…β˜†β˜†β˜†2022β†’ Residue 153
NM_003849.4(SUCLG1):c.643C>T (p.Gln215Ter)Pathogenic
Mitochondrial DNA depletion syndrome 9
β˜…β˜†β˜†β˜†2022β†’ Residue 215
NM_003849.4(SUCLG1):c.826-1G>ALikely pathogenic
Mitochondrial DNA depletion syndrome 9
β˜…β˜†β˜†β˜†2022
NM_003849.4(SUCLG1):c.790G>T (p.Glu264Ter)Likely pathogenic
Mitochondrial DNA depletion syndrome 9
β˜…β˜†β˜†β˜†2021β†’ Residue 264
NM_003849.4(SUCLG1):c.457_458delinsTA (p.Val153Ter)Pathogenic
Mitochondrial DNA depletion syndrome 9
β˜…β˜†β˜†β˜†2020β†’ Residue 153
View on ClinVar β†—
Related Genes
OGDHLProtein interaction100%DHTKD1Protein interaction99%BCKDHAProtein interaction95%BCKDHBProtein interaction95%CSProtein interaction95%DBTProtein interaction95%
Tissue Expression6 tissues
Heart
100%
Liver
55%
Brain
29%
Bone Marrow
27%
Lung
23%
Ovary
21%
Gene Interaction Network
Click a node to explore
SUCLG1OGDHLDHTKD1BCKDHABCKDHBCSDBT
PROTEIN STRUCTURE
Preparing viewer…
PDB6WCV Β· 1.52 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.96LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.68 [0.49–0.96]
RankingsWhere SUCLG1 stands among ~20K protein-coding genes
  • #5,003of 20,598
    Most Researched96 Β· top quartile
  • #1,753of 5,498
    Most Pathogenic Variants32
  • #9,015of 17,882
    Most Constrained (LOEUF)0.96
Genes detectedSUCLG1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
SUCLG1 restricts POLRMT succinylation to enhance mitochondrial biogenesis and leukemia progression.
PMID: 38649537
EMBO J Β· 2024
1.00
2
Mitochondrial DNA maintenance defects.
PMID: 28215579
Biochim Biophys Acta Mol Basis Dis Β· 2017
0.90
3
Leigh Syndrome: A Study of 209 Patients at the Beijing Children's Hospital.
PMID: 35094435
Ann Neurol Β· 2022
0.80
4
Mitochondrial DNA depletion syndromes: review and updates of genetic basis, manifestations, and therapeutic options.
PMID: 23385875
Neurotherapeutics Β· 2013
0.70
5
Ketogenic Ξ²-hydroxybutyrate regulates Ξ²-hydroxybutyrylation of TCA cycle-associated enzymes and attenuates disease-associated pathologies in Alzheimer's mice.
PMID: 39411885
Aging Cell Β· 2025
0.60