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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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SYCE1
synaptonemal complex central element protein 1
Chromosome 10 Β· 10q26.3
NCBI Gene: 93426Ensembl: ENSG00000171772.17HGNC: HGNC:28852UniProt: A0A0B4J1R9
34PubMed Papers
22Diseases
0Drugs
7Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingsynaptonemal complexcentral elementchromosomespermatogenic failure 15premature ovarian failure 12male infertility with azoospermia or oligozoospermia due to single gene mutationPrimary amenorrhea
✦AI Summary

SYCE1 (synaptonemal complex central element protein 1) is a major structural component of the transverse central element of synaptonemal complexes (SCs), which form between homologous chr10 during meiotic prophase 1. The protein adopts a curved coiled-coil structure approximately 50 nm in length, functioning as a physical strut that stabilizes the SC central element 1. SYCE1 requires interaction with SYCP1 for incorporation into the central element and is essential for homologous chromosome 10 and meiotic recombination 2. Pathogenic SYCE1 mutations cause primary ovarian insufficiency (POI) and non-obstructive azoospermia (NOA), two major causes of human infertility 34. Identified mutations include homozygous deletions (c.689_690del) and splice site mutations (c.197-2A>G) that disrupt SYCE1 expression, protein localization, or binding to interaction partners 56. In mouse models, the c.197-2A>G mutation causes transcript degradation, impaired homologous chromosome 10, meiotic arrest, and increased apoptosis of meiotic cells, resulting in complete infertility in both males and females 6. Functional studies demonstrate that pathogenic SYCE1 variants disrupt SC assembly and meiotic recombination 2. Whole-exome sequencing has identified SYCE1 mutations in approximately 20-25% of POI cases and in patients with maturation arrest, establishing genetic screening as a clinically relevant diagnostic approach 37.

Sources cited
1
SYCE1 structure: curved coiled-coil protein ~50 nm length functioning as structural strut supporting SC central element
PMID: 30607510
2
SYCE1 mutations disrupt interaction with SYCP1/C14ORF39 and impair SC assembly and meiosis; identified in POI and NOA patients
PMID: 34718620
3
SYCE1 mutations identified in POI by whole-exome sequencing; genetic screening accounts for ~20-25% of POI cases
PMID: 26243799
4
SYCE1 is major gene associated with nonsyndromic POI, implicated in meiosis/DNA repair pathways
PMID: 34794894
5
Homozygous SYCE1 frameshift mutation (c.689_690del) causes NOA through altered expression and abnormal cytoplasmic localization
PMID: 35023261
6
SYCE1 c.197-2A>G splice site mutation causes transcript degradation, meiotic arrest, and infertility in homozygous mice
PMID: 39909494
7
SYCE1 variants identified in maturation arrest patients; WES useful for genetic diagnosis in NOA
PMID: 35413094
Disease Associationsβ“˜22
spermatogenic failure 15Open Targets
0.46Moderate
premature ovarian failure 12Open Targets
0.45Moderate
male infertility with azoospermia or oligozoospermia due to single gene mutationOpen Targets
0.39Weak
Primary amenorrheaOpen Targets
0.32Weak
primary ovarian insufficiencyOpen Targets
0.28Weak
azoospermiaOpen Targets
0.09Suggestive
partial chromosome Y deletionOpen Targets
0.08Suggestive
spermatogenic failure 57Open Targets
0.07Suggestive
spermatogenic failure 50Open Targets
0.07Suggestive
spermatogenic failure 25Open Targets
0.07Suggestive
isochromosomy YpOpen Targets
0.07Suggestive
spermatogenic failure 71Open Targets
0.07Suggestive
spermatogenic failure, X-linked, 2Open Targets
0.07Suggestive
46,XX testicular disorder of sex developmentOpen Targets
0.07Suggestive
spinocerebellar ataxia type 32Open Targets
0.07Suggestive
spermatogenic failure 63Open Targets
0.07Suggestive
isochromosomy YqOpen Targets
0.06Suggestive
spermatogenic failure 84Open Targets
0.06Suggestive
spermatogenic failure 93Open Targets
0.06Suggestive
spermatogenic failure 65Open Targets
0.06Suggestive
Premature ovarian failure 12UniProt
Spermatogenic failure, 15UniProt
Pathogenic Variants7
NM_001143764.3(SYCE1):c.455_456del (p.Arg152fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2018β†’ Residue 152
NM_001143764.3(SYCE1):c.449_452del (p.Lys150fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2017β†’ Residue 150
NM_001143764.3(SYCE1):c.197-2A>GPathogenic
Spermatogenic failure 15
β˜†β˜†β˜†β˜†2026
NM_001143764.3(SYCE1):c.721C>T (p.Gln241Ter)Pathogenic
Premature ovarian failure 12
β˜†β˜†β˜†β˜†2026β†’ Residue 241
NM_001143764.3(SYCE1):c.475G>A (p.Glu159Lys)Pathogenic
Premature ovarian failure 12
β˜†β˜†β˜†β˜†2026β†’ Residue 159
NM_001143764.3(SYCE1):c.271+2T>CPathogenic
Spermatogenic failure 15
β˜†β˜†β˜†β˜†2026
NM_001143764.3(SYCE1):c.271+1G>APathogenic
Premature ovarian failure 12
β˜†β˜†β˜†β˜†2026
View on ClinVar β†—
Related Genes
SPO11Protein interaction100%SYCP2Protein interaction100%TEX12Protein interaction100%REC8Protein interaction100%SMC1BProtein interaction100%HORMAD1Protein interaction100%
Tissue Expression6 tissues
Brain
100%
Liver
58%
Ovary
46%
Bone Marrow
6%
Lung
4%
Heart
0%
Gene Interaction Network
Click a node to explore
SYCE1SPO11SYCP2TEX12REC8SMC1BHORMAD1
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q8N0S2
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.90LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.69 [0.53–0.90]
RankingsWhere SYCE1 stands among ~20K protein-coding genes
  • #11,251of 20,598
    Most Researched34
  • #3,241of 5,498
    Most Pathogenic Variants7
  • #8,128of 17,882
    Most Constrained (LOEUF)0.90
Genes detectedSYCE1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Genetics of primary ovarian insufficiency: new developments and opportunities.
PMID: 26243799
Hum Reprod Update Β· 2015
1.00
2
Genetics of ovarian insufficiency and defects of folliculogenesis.
PMID: 34794894
Best Pract Res Clin Endocrinol Metab Β· 2022
0.90
3
Variations of C14ORF39 and SYCE1 Identified in Idiopathic Premature Ovarian Insufficiency and Nonobstructive Azoospermia.
PMID: 34718620
J Clin Endocrinol Metab Β· 2022
0.80
4
Differential expression and regulation of ADAD1, DMRTC2, PRSS54, SYCE1, SYCP1, TEX101, TEX48, and TMPRSS12 gene profiles in colon cancer tissues and their in vitro response to epigenetic drugs.
PMID: 39208330
PLoS One Β· 2024
0.70
5
Novel exon mutation in SYCE1 gene is associated with non-obstructive azoospermia.
PMID: 35023261
J Cell Mol Med Β· 2022
0.60