HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
SYNGR1
synaptogyrin 1
Chromosome 22 · 22q13.1
NCBI Gene: 9145Ensembl: ENSG00000100321.16HGNC: HGNC:11498UniProt: O43759
35PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
cytosolprotein bindingregulation of short-term neuronal synaptic plasticitysynaptic vesicle membrane organizationrheumatoid arthritisprimary biliary cirrhosisCrohn's diseasehair color
✦AI Summary

SYNGR1 (synaptogyrin 1) is a transmembrane protein localized to neurotransmitter-containing vesicles that plays critical roles in synaptic function and regulation of exocytosis 1. The gene regulates short-term and long-term synaptic plasticity and modulates synaptophysin localization into synaptic-like microvesicles, contributing to vesicle formation and maturation. SYNGR1 expression is significantly reduced in glioblastoma; overexpression of SYNGR1 inhibits GBM cell proliferation, invasion, and adhesion by suppressing intracellular FGF1-mediated lipid droplet accumulation and cytoskeleton remodeling 2. Genetically, SYNGR1 variants are associated with psychiatric disorders. Multiple polymorphisms show association with schizophrenia susceptibility in Italian and Indian populations, with some rare variants potentially affecting gene expression and protein function 1. The gene also demonstrates association with bipolar disorder in southern Indian populations 3. Beyond neuropsychiatry, SYNGR1 has been identified as a susceptibility locus for Sjögren's disease in genome-wide association studies 4. Additionally, pollution-induced alterations in SYNGR1 expression, mediated through DNA methylation changes, are associated with increased risk of gastrointestinal diseases including gastric ulcer and ulcerative colitis 5. SYNGR1 represents a potential causal methylation-mRNA regulation chain in rheumatoid arthritis pathogenesis 6, and genetic variants near SYNGR1 associate with coagulation factor VIII and von Willebrand factor plasma levels, relevant to thrombotic disease risk 7.

Sources cited
1
SYNGR1 is a transmembrane protein of neurotransmitter-containing vesicles; polymorphisms show association with schizophrenia susceptibility with potential functional effects on gene expression
PMID: 19641478
2
SYNGR1 overexpression inhibits GBM cell proliferation and invasion by suppressing FGF1-mediated lipid droplet accumulation and cytoskeleton remodeling
PMID: 40478501
3
SYNGR1 polymorphisms associate with both schizophrenia and bipolar disorder in case-control analysis from southern India
PMID: 16215643
4
SYNGR1 identified as novel genome-wide significant susceptibility locus for Sjögren's disease
PMID: 35896530
5
Pollution-modulated lower DNA methylation at SYNGR1 associates with increased SYNGR1 expression and increased risk of gastric ulcer, ulcerative colitis, and GERD
PMID: 39163931
6
SYNGR1 identified as part of a potential causal methylation-mRNA regulation chain for rheumatoid arthritis
PMID: 33386149
7
SYNGR1 genetic variants associate with coagulation factor VIII and von Willebrand factor plasma levels in genome-wide association meta-analysis
PMID: 30586737
Disease Associationsⓘ20
rheumatoid arthritisOpen Targets
0.48Moderate
primary biliary cirrhosisOpen Targets
0.44Moderate
Crohn's diseaseOpen Targets
0.33Weak
hair colorOpen Targets
0.29Weak
autoimmune diseaseOpen Targets
0.29Weak
systemic lupus erythematosusOpen Targets
0.29Weak
ulcerative colitisOpen Targets
0.18Weak
facial painOpen Targets
0.15Weak
intelligenceOpen Targets
0.13Weak
Familial prostate cancerOpen Targets
0.11Weak
prostate cancerOpen Targets
0.11Weak
inflammatory bowel diseaseOpen Targets
0.11Weak
pulmonary arterial hypertensionOpen Targets
0.04Suggestive
glioblastoma multiformeOpen Targets
0.04Suggestive
immunodeficiency 75Open Targets
0.04Suggestive
autoinflammation with episodic fever and lymphadenopathyOpen Targets
0.03Suggestive
Burkitts lymphomaOpen Targets
0.03Suggestive
Hepatic veno-occlusive disease - immunodeficiencyOpen Targets
0.03Suggestive
hepatic veno-occlusive disease-immunodeficiency syndromeOpen Targets
0.03Suggestive
dominant beta-thalassemiaOpen Targets
0.03Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
SYNPRProtein interaction93%TAB1Protein interaction78%SYPProtein interaction61%SYNGR2Shared pathway40%SHISA9Shared pathway20%SHISA8Shared pathway20%
Tissue Expression6 tissues
Bone Marrow
100%
Ovary
52%
Brain
36%
Heart
19%
Liver
3%
Lung
3%
Gene Interaction Network
Click a node to explore
SYNGR1SYNPRTAB1SYPSYNGR2SHISA9SHISA8
PROTEIN STRUCTURE
Preparing viewer…
PDB8A6M · NMR
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.90LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.58 [0.38–0.90]
RankingsWhere SYNGR1 stands among ~20K protein-coding genes
  • #11,078of 20,598
    Most Researched35
  • #8,149of 17,882
    Most Constrained (LOEUF)0.90
Genes detectedSYNGR1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Association study and mutational screening of SYNGR1 as a candidate susceptibility gene for schizophrenia.
PMID: 19641478
Psychiatr Genet · 2009
1.00
2
Genome-wide association study identifies Sjögren's risk loci with functional implications in immune and glandular cells.
PMID: 35896530
Nat Commun · 2022
0.90
3
The effects of air and transportation noise pollution-related altered blood gene expression, DNA methylation, and protein abundance levels on gastrointestinal diseases risk.
PMID: 39163931
Sci Total Environ · 2024
0.80
4
Engineering overexpressing SYNGR1 inhibited the progression of GBM cells by suppressing the intracellular FGF1-mediated LDs accumulation and cytoskeleton remodeling.
PMID: 40478501
J Neurooncol · 2025
0.70
5
A "Goldilocks Zone" for Recruiting BET Proteins with Bromodomain-1-Selective Ligands.
PMID: 39401417
ACS Chem Biol · 2024
0.60