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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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SYNPO
synaptopodin
Chromosome 5 · 5q33.1
NCBI Gene: 11346Ensembl: ENSG00000171992.14HGNC: HGNC:30672UniProt: Q8N3V7
77PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingactin cytoskeletoncytosolactin bindingcervical carcinomaHypocalcemiaosteoarthritis, kneeosteoarthritis, hip
✦AI Summary

SYNPO encodes synaptopodin, an actin-binding protein critical for maintaining podocyte structure and function in the kidney. SYNPO localizes to podocyte foot processes and dendritic spine apparatuses, where it regulates actin cytoskeleton organization and bundle assembly 1. In podocytes, SYNPO is essential for foot process architecture and integrity; its absence exacerbates disease progression in Alport syndrome by impairing myosin IIA localization to actin cables near the glomerular basement membrane, facilitating podocyte detachment 1. SYNPO stability is regulated by Flotillin-2, which protects synaptopodin from proteasomal degradation; loss of this protection contributes to podocyte injury in diabetic nephropathy 2. Additionally, SYNPO expression is downregulated in focal segmental glomerulosclerosis (FSGS) associated with TRPC6 mutations, correlating with F-actin cytoskeleton disruption 3. Beyond kidney function, SYNPO plays a protective role in intestinal epithelial barrier maintenance, where microbiota-derived butyrate selectively induces SYNPO expression at tight junctions; SYNPO-deficient mice show exacerbated colitis susceptibility 4. Recent evidence suggests SYNPO also functions in immune regulation, with its upregulation in calcium signaling pathways promoting neutrophil activation in cancer microenvironments 5. SYNPO represents a therapeutic target in glomerular and gastrointestinal diseases through actin cytoskeleton stabilization.

Sources cited
1
SYNPO is an actin-associated protein in podocyte foot processes; its absence accelerates Alport syndrome progression and impairs myosin IIA localization to actin cables
PMID: 34029143
2
Flotillin-2 stabilizes SYNPO by protecting it from K48-linked polyubiquitination; loss of this interaction contributes to podocyte injury in diabetic nephropathy
PMID: 40681143
3
SYNPO expression is weak in podocytes with TRPC6 mutations associated with FSGS, correlating with F-actin cytoskeleton disruption
PMID: 40409549
4
Butyrate induces SYNPO expression in intestinal epithelium; SYNPO localizes to tight junctions and F-actin stress fibers; SYNPO-deficient mice show increased colitis susceptibility
PMID: 32398370
5
PVT1 knockdown enhances SYNPO secretion in gastric cancer cells; SYNPO demonstrates physical interactions with calcium channel proteins RYR2/RYR3 and promotes neutrophil activation
PMID: 40775351
6
SYNPO protein levels decrease with METTL3-mediated m6A methylation in podocytes; SYNPO is a marker of podocyte function in FSGS
PMID: 40287046
Disease Associationsⓘ20
cervical carcinomaOpen Targets
0.31Weak
HypocalcemiaOpen Targets
0.30Weak
osteoarthritis, kneeOpen Targets
0.27Weak
osteoarthritis, hipOpen Targets
0.27Weak
nephrotic syndromeOpen Targets
0.26Weak
total joint arthroplastyOpen Targets
0.25Weak
osteoarthritisOpen Targets
0.23Weak
focal segmental glomerulosclerosisOpen Targets
0.13Weak
familial idiopathic steroid-resistant nephrotic syndromeOpen Targets
0.12Weak
tooth diseaseOpen Targets
0.09Suggestive
acute kidney injuryOpen Targets
0.04Suggestive
Abnormal erythrocyte morphologyOpen Targets
0.04Suggestive
cancerOpen Targets
0.03Suggestive
Lewy body dementiaOpen Targets
0.03Suggestive
type 2 diabetes mellitusOpen Targets
0.03Suggestive
diabetic nephropathyOpen Targets
0.03Suggestive
chronic kidney diseaseOpen Targets
0.02Suggestive
atypical teratoid rhabdoid tumorOpen Targets
0.02Suggestive
liver dysplastic noduleOpen Targets
0.02Suggestive
juvenile idiopathic arthritisOpen Targets
0.02Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
NCK1Protein interaction100%ACTN4Protein interaction98%NPHS1Protein interaction98%PODXLProtein interaction98%WT1Protein interaction98%NPHS2Protein interaction98%
Tissue Expression6 tissues
Heart
100%
Lung
18%
Brain
10%
Liver
10%
Ovary
7%
Bone Marrow
0%
Gene Interaction Network
Click a node to explore
SYNPONCK1ACTN4NPHS1PODXLWT1NPHS2
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q8N3V7
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.58Moderately Constrained
pLIⓘ
0.51Intermediate
Observed/Expected LoF0.39 [0.27–0.58]
RankingsWhere SYNPO stands among ~20K protein-coding genes
  • #6,213of 20,598
    Most Researched77
  • #3,854of 17,882
    Most Constrained (LOEUF)0.58 · top quartile
Genes detectedSYNPO
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Drebrin in Renal Glomeruli.
PMID: 28865030
Adv Exp Med Biol · 2017
1.00
2
Flot2 protects against podocyte injury by maintaining the stability of synaptopodin in diabetic nephropathy.
PMID: 40681143
Metabolism · 2025
0.90
3
Calcium overload via PVT1 reprograms neutrophil fate and constrains gastric cancer progression.
PMID: 40775351
J Transl Med · 2025
0.80
4
Novel immune cross-talk between inflammatory bowel disease and IgA nephropathy.
PMID: 38628140
Ren Fail · 2024
0.70
5
Delayed inactivation of TRPC6 as a determinative characteristic of FSGS-associated variants.
PMID: 40409549
J Biol Chem · 2025
0.60