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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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SYT4
synaptotagmin 4
Chromosome 18 · 18q12.3
NCBI Gene: 6860Ensembl: ENSG00000132872.13HGNC: HGNC:11512UniProt: Q9H2B2
28PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Highly Constrained
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
positive regulation of dendrite extensionprotein bindingnegative regulation of catecholamine secretionneuronal dense core vesicleneurodegenerative diseaseattention deficit hyperactivity disordersmoking initiationbenign neoplasm of adrenal gland
✦AI Summary

SYT4 (synaptotagmin 4) is a calcium-sensing vesicle protein with dual roles in neuronal function and cancer pathogenesis. In normal physiology, SYT4 does not directly bind Ca2+ but regulates neuronal dense core vesicle (DCV) trafficking through interaction with motor protein KIF1A; MAPK8/JNK1-mediated phosphorylation destabilizes this interaction to capture DCVs at synapses 1. SYT4 is abundant in cerebellar GABAergic neurons during development and adulthood 2. During pancreatic β cell maturation, SYT4 expression increases ~8-fold and inversely regulates readily releasable insulin granule pools, modulating glucose-stimulated insulin secretion sensitivity 3. In pathological contexts, SYT4 emerges as a pro-oncogenic driver across multiple cancer types. In gastric cancer, SYT4 is upregulated and promotes proliferation, cell cycle progression, and apoptosis suppression via two distinct mechanisms: direct interaction with PSMC6 to activate Wnt/β-catenin signaling 4, and enhancement of intracellular Ca2+ influx through MAPK pathway activation 5. The calcium channel blocker amlodipine suppresses SYT4-driven gastric cancer growth 5. In prostate cancer, SYT4 binds SNAP25 to promote exosomal secretion, conferring enzalutamide resistance 6. Neuropsychiatrically, SYT4 overexpression in the medial prefrontal cortex drives chr18 stress-induced anhedonia via BDNF-TrkB signaling suppression 7, and SYT4 is identified as a bipolar disorder-associated gene 8.

Sources cited
1
SYT4 does not bind Ca2+ directly; involved in DCV mobility via KIF1A interaction, regulated by MAPK8/JNK1 phosphorylation
PMID: 23999003
2
SYT4 is abundantly expressed in cerebellar GABAergic neurons including Purkinje cells in adult zebrafish and rodents
PMID: 38765140
3
SYT4 increases ~8-fold during pancreatic β cell maturation and inversely regulates readily releasable insulin granule pools
PMID: 29656931
4
SYT4 is upregulated in gastric cancer and promotes progression via PSMC6 interaction and Wnt/β-catenin activation
PMID: 41281742
5
SYT4 promotes gastric cancer proliferation through Ca2+-dependent MAPK pathway activation; amlodipine suppresses SYT4-driven growth
PMID: 38632140
6
SYT4 binds SNAP25 to promote exosomal secretion and confer enzalutamide resistance in prostate cancer
PMID: 38889208
7
SYT4 overexpression in medial prefrontal cortex drives chronic stress-induced anhedonia through BDNF-TrkB signaling suppression
PMID: 38297157
8
SYT4 is identified as a bipolar disorder-associated gene through single-cell multiomics analysis
PMID: 39107272
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.39Weak
attention deficit hyperactivity disorderOpen Targets
0.28Weak
smoking initiationOpen Targets
0.28Weak
benign neoplasm of adrenal glandOpen Targets
0.28Weak
substance abuseOpen Targets
0.27Weak
coffee consumptionOpen Targets
0.27Weak
upper respiratory tract disorderOpen Targets
0.22Weak
diabetes mellitusOpen Targets
0.21Weak
obesityOpen Targets
0.21Weak
placental retentionOpen Targets
0.20Weak
metabolic syndromeOpen Targets
0.20Weak
abnormality of serum enzyme levelsOpen Targets
0.19Weak
Left bundle branch blockOpen Targets
0.17Weak
HypercholesterolemiaOpen Targets
0.16Weak
ankylosing spondylitisOpen Targets
0.16Weak
Parkinson diseaseOpen Targets
0.11Weak
musculoskeletal system diseaseOpen Targets
0.11Weak
gastric cancerOpen Targets
0.09Suggestive
posterior cortical atrophyOpen Targets
0.07Suggestive
Duane retraction syndromeOpen Targets
0.07Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
CPLX1Protein interaction100%SNAP25Protein interaction89%KIF1AProtein interaction76%SYT2Shared pathway31%SYT7Shared pathway26%SYT1Shared pathway24%
Tissue Expression6 tissues
Brain
100%
Bone Marrow
3%
Ovary
1%
Liver
0%
Lung
0%
Heart
0%
Gene Interaction Network
Click a node to explore
SYT4CPLX1SNAP25KIF1ASYT2SYT7SYT1
PROTEIN STRUCTURE
Preparing viewer…
PDB1UGK · NMR
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.32Highly Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.15 [0.08–0.32]
RankingsWhere SYT4 stands among ~20K protein-coding genes
  • #12,458of 20,598
    Most Researched28
  • #1,286of 17,882
    Most Constrained (LOEUF)0.32 · top 10%
Genes detectedSYT4
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
SYT4 Interacts with PSMC6 to Facilitate Malignant Progression in Gastric Carcinoma via Activating Wnt/β-catenin Signaling.
PMID: 41281742
Int J Biol Sci · 2025
1.00
2
Synaptotagmin-4 induces anhedonic responses to chronic stress via BDNF signaling in the medial prefrontal cortex.
PMID: 38297157
Exp Mol Med · 2024
0.90
3
Epigenetic and Tumor Microenvironment for Prognosis of Patients with Gastric Cancer.
PMID: 37238607
Biomolecules · 2023
0.80
4
Single-cell multiomics analysis reveals cell/tissue-specific associations in bipolar disorder.
PMID: 39107272
Transl Psychiatry · 2024
0.70
5
Conserved expression of the zebrafish
PMID: 38765140
Heliyon · 2024
0.60