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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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TAF9
TATA-box binding protein associated factor 9
Chromosome 5 · 5q13.2
NCBI Gene: 6880Ensembl: ENSG00000273841.7HGNC: HGNC:11542UniProt: Q16594
147PubMed Papers
0Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub GeneTranscription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
histone acetyltransferase activityRNA polymerase II preinitiation complex assemblypositive regulation of transcription initiation by RNA polymerase IIpositive regulation of response to cytokine stimulus
✦AI Summary

TAF9 is a core component of the TFIID basal transcription factor complex essential for RNA polymerase II-dependent transcription initiation 1. As part of TFIID, TAF9 facilitates promoter recognition and pre-initiation complex assembly 1. Beyond TFIID, TAF9 participates in multiple transcriptional regulatory complexes including TFTC, PCAF, and STAGA, where it functions in both transcriptional activation and repression of distinct gene sets 2. TAF9 is essential for cell viability 2 and plays roles in cell differentiation processes including nervous system development and myogenesis 3. Mechanistically, TAF9 acetylation status regulates TFIID recruitment; HDAC1-mediated TAF9 deacetylation promotes TFIID assembly and gene activation, while acetylated TAF9 prevents TFIID binding 4. TAF9 functions as a shared coactivator competed for by transcription factors like p53 and GLI1, with TAF9 binding critical for GLI oncogenic activity 5. Clinically, TAF9 dysregulation associates with disease. Molecular mimicry between cytomegalovirus pp65 and TAF9 triggers cross-reactive autoantibodies in systemic lupus erythematosus patients, correlating with glomerulonephritis and proteinuria 67. TAF9 overexpression in hepatoblastoma promotes epithelial-mesenchymal transition and poor prognosis through the lncRNA938-TAF9-TTK axis, representing a potential therapeutic target 8.

Sources cited
1
TAF9 is a component of TFIID complex that recognizes promoters and promotes pre-initiation complex assembly
PMID: 33795473
2
TAF9 participates in TFTC, PCAF, and STAGA complexes; regulates transcriptional activation and repression; essential for cell viability
PMID: 15899866
3
TAF9 participates in cell differentiation including nervous system development and myogenesis
PMID: 38126142
4
HDAC1 activates gene transcription by deacetylating TAF9, promoting TFIID complex assembly and recruitment
PMID: 28572446
5
TAF9 is a shared coactivator for p53 and GLI1; TAF9 binding is critical for GLI oncogenic activity
PMID: 26282181
6
Cytomegalovirus pp65 peptide induces cross-reactive autoantibodies against TAF9 causing lupus-like autoimmunity with glomerulonephritis
PMID: 32541894
7
CMVpp65-specific IgG shows cross-reactivity with TAF9 and dsDNA in SLE patients; elevated anti-TAF9 antibodies associated with clinical manifestations
PMID: 34442018
8
TAF9 is overexpressed in hepatoblastoma and promotes EMT and metastasis through the lncRNA938-TAF9-TTK axis
PMID: 40841910
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
AGXTProtein interaction100%DR1Protein interaction100%KAT2AProtein interaction100%SARS1Protein interaction100%ATXN7Protein interaction100%TADA2AProtein interaction100%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
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TAF9AGXTDR1KAT2ASARS1ATXN7TADA2A
PROTEIN STRUCTURE
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PDB6F3T · 2.50 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.00LoF Tolerant
pLIⓘ
0.01Tolerant
Observed/Expected LoF0.59 [0.36–1.00]
RankingsWhere TAF9 stands among ~20K protein-coding genes
  • #3,096of 20,598
    Most Researched147 · top quartile
  • #9,652of 17,882
    Most Constrained (LOEUF)1.00
Genes detectedTAF9
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Human cytomegalovirus pp65 peptide-induced autoantibodies cross-reacts with TAF9 protein and induces lupus-like autoimmunity in BALB/c mice.
PMID: 32541894
Sci Rep · 2020
1.00
2
LncRNA938/ TAF9/TTK axis promotes EMT and serves as a therapeutic target in hepatoblastoma.
PMID: 40841910
J Transl Med · 2025
0.90
3
Histone deacetylase 1 activates PU.1 gene transcription through regulating TAF9 deacetylation and transcription factor IID assembly.
PMID: 28572446
FASEB J · 2017
0.80
4
Participation of the TBP-associated factors (TAFs) in cell differentiation.
PMID: 38126142
J Cell Physiol · 2024
0.70
5
In vivo functional analysis of the histone 3-like TAF9 and a TAF9-related factor, TAF9L.
PMID: 12837753
J Biol Chem · 2003
0.60