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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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TBX4
T-box transcription factor 4
Chromosome 17 Β· 17q23.2
NCBI Gene: 9496Ensembl: ENSG00000121075.12HGNC: HGNC:11603UniProt: P57082
45PubMed Papers
22Diseases
0Drugs
67Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
embryonic lung developmentskeletal system morphogenesislimb morphogenesisembryonic hindlimb morphogenesiscoxopodopatellar syndromeautosomal recessive ameliapulmonary hypertension, primary, 1pulmonary arterial hypertension
✦AI Summary

TBX4 encodes a T-box transcription factor with essential roles in embryonic development of multiple organ systems, particularly the lungs, skeletal system, and limbs. As a DNA-binding transcriptional regulator, TBX4 controls gene expression programs critical for proper organogenesis 1. The protein functions within the PITX1-TBX4 transcriptional pathway, which is uniquely expressed in hindlimb development and helps explain the foot and skeletal phenotypes associated with TBX4 mutations 2. Recent ChIP-seq studies reveal that TBX4 directly regulates genes involved in extracellular matrix organization, actin cytoskeleton, cell migration, and various signaling pathways including serine/threonine kinase and GTPase-mediated signaling 3. TBX4 also interacts with other developmental pathways, including potential crosstalk with SHH-FOXF1 signaling during lung morphogenesis 4. Clinically, TBX4 variants are definitively associated with pulmonary arterial hypertension (PAH), representing the second most common cause of heritable PAH, particularly in pediatric cases 56. Patients with TBX4 variants typically present with milder PAH phenotypes compared to other PAH-associated gene mutations 7. The gene is also linked to broader respiratory diseases and developmental disorders affecting skeletal structures, reflecting its fundamental role in embryonic patterning and organ development 17.

Sources cited
1
TBX4 encodes a T-box transcription factor important in respiratory diseases and developmental disorders
PMID: 36367783
2
TBX4 functions in the PITX1-TBX4 transcriptional pathway and is uniquely expressed in hindlimb development
PMID: 21817922
3
TBX4 directly regulates genes involved in extracellular matrix, actin organization, and various signaling pathways
PMID: 39980707
4
TBX4 potentially interacts with SHH-FOXF1 signaling during lung morphogenesis
PMID: 33478486
5
TBX4 variants have definitive evidence for causing pulmonary arterial hypertension
PMID: 37422716
6
TBX4 is implicated with child-onset PAH and represents a significant genetic risk factor
PMID: 31727138
7
TBX4 variants associate with milder PAH phenotypes and broader spectrum of lung disorders
PMID: 32195678
Disease Associationsβ“˜22
coxopodopatellar syndromeOpen Targets
0.79Strong
autosomal recessive ameliaOpen Targets
0.55Moderate
pulmonary hypertension, primary, 1Open Targets
0.53Moderate
pulmonary arterial hypertensionOpen Targets
0.50Moderate
osteoarthritis, hipOpen Targets
0.45Moderate
Pulmonary arterial hypertension associated with congenital heart diseaseOpen Targets
0.37Weak
heritable pulmonary arterial hypertensionOpen Targets
0.37Weak
Tetraamelia - multiple malformationsOpen Targets
0.37Weak
tetraamelia-multiple malformations syndromeOpen Targets
0.37Weak
Pulmonary hypoplasiaOpen Targets
0.34Weak
Absence of the sacrumOpen Targets
0.34Weak
Abnormality of prenatal development or birthOpen Targets
0.34Weak
Aplasia/hypoplasia involving bones of the lower limbsOpen Targets
0.34Weak
hydronephrosisOpen Targets
0.34Weak
HydroureterOpen Targets
0.34Weak
hypoplastic left heart syndromeOpen Targets
0.34Weak
sacral agenesis-abnormal ossification of the vertebral bodies-persistent notochordal canal syndromeOpen Targets
0.34Weak
thyroiditisOpen Targets
0.33Weak
total hip arthroplastyOpen Targets
0.29Weak
familial primary pulmonary hypoplasiaOpen Targets
0.29Weak
Amelia, posterior, with pelvic and pulmonary hypoplasia syndromeUniProt
Ischiocoxopodopatellar syndrome with or without pulmonary arterial hypertensionUniProt
Pathogenic Variants67
NM_001321120.2(TBX4):c.748C>T (p.Arg250Trp)Pathogenic
Coxopodopatellar syndrome|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 250
NM_001321120.2(TBX4):c.702+1G>APathogenic
not provided|Pulmonary arterial hypertension associated with congenital heart disease|Pulmonary hypertension, primary, 1|TBX4-related disorder
β˜…β˜…β˜†β˜†2025
NM_001321120.2(TBX4):c.847C>T (p.Gln283Ter)Pathogenic
not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 283
NM_001321120.2(TBX4):c.1057C>T (p.Arg353Ter)Pathogenic
Coxopodopatellar syndrome|Pulmonary hypertension, primary, 1;Coxopodopatellar syndrome|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 353
NM_001321120.2(TBX4):c.670_672del (p.Phe224del)Pathogenic
Pulmonary arterial hypertension associated with congenital heart disease|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 224
NM_001321120.2(TBX4):c.1115dup (p.Pro373fs)Pathogenic
Pulmonary arterial hypertension|Coxopodopatellar syndrome|Coxopodopatellar syndrome;Primary pulmonary hypoplasia|Pulmonary hypertension, primary, 1|Pulmonary hypertension, primary, 1;Coxopodopatellar syndrome|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 373
NM_001321120.2(TBX4):c.1018C>T (p.Arg340Ter)Pathogenic
not provided|Coxopodopatellar syndrome
β˜…β˜…β˜†β˜†2024β†’ Residue 340
NM_001321120.2(TBX4):c.1021+1G>APathogenic
not provided|Coxopodopatellar syndrome;Pulmonary hypertension, primary, 1
β˜…β˜…β˜†β˜†2023
NM_001321120.2(TBX4):c.1115del (p.Pro372fs)Pathogenic
Pulmonary arterial hypertension associated with congenital heart disease|Pulmonary hypertension, primary, 1|not provided
β˜…β˜…β˜†β˜†2022β†’ Residue 372
NM_001321120.2(TBX4):c.210dup (p.Leu71fs)Pathogenic
Pulmonary hypertension, primary, 1|not provided
β˜…β˜…β˜†β˜†2022β†’ Residue 71
NM_001321120.2(TBX4):c.703-2A>GLikely pathogenic
not provided
β˜…β˜†β˜†β˜†2026
NM_001321120.2(TBX4):c.281+2T>ALikely pathogenic
not provided
β˜…β˜†β˜†β˜†2025
NM_001321120.2(TBX4):c.1167dup (p.Arg390fs)Pathogenic
Coxopodopatellar syndrome|not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 390
NM_001321120.2(TBX4):c.1100_1101dup (p.Phe368fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 368
NM_001321120.2(TBX4):c.636del (p.Ala213fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 213
NM_001321120.2(TBX4):c.1104_1107dup (p.Ser370fs)Pathogenic
Coxopodopatellar syndrome
β˜…β˜†β˜†β˜†2025β†’ Residue 370
NM_001321120.2(TBX4):c.829C>T (p.Gln277Ter)Likely pathogenic
Autosomal recessive amelia
β˜…β˜†β˜†β˜†2024β†’ Residue 277
NM_001321120.2(TBX4):c.186+1G>TLikely pathogenic
not provided
β˜…β˜†β˜†β˜†2024
NM_001321120.2(TBX4):c.1427_1430dup (p.Leu478fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 478
NM_001321120.2(TBX4):c.932C>G (p.Ser311Ter)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 311
View on ClinVar β†—
Related Genes
PITX1Protein interaction92%HOXC10Protein interaction91%HOXC11Protein interaction91%PDLIM7Protein interaction70%GDF2Co-mentioned in literature20%GGCXCo-mentioned in literature20%
Tissue Expression6 tissues
Lung
100%
Brain
0%
Liver
0%
Ovary
0%
Bone Marrow
0%
Heart
0%
Gene Interaction Network
Click a node to explore
TBX4PITX1HOXC10HOXC11PDLIM7GDF2GGCX
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt P57082
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.38Moderately Constrained
pLIβ“˜
1.00Intolerant
Observed/Expected LoF0.24 [0.15–0.38]
RankingsWhere TBX4 stands among ~20K protein-coding genes
  • #9,528of 20,598
    Most Researched45
  • #1,092of 5,498
    Most Pathogenic Variants67 Β· top quartile
  • #1,822of 17,882
    Most Constrained (LOEUF)0.38 Β· top quartile
Genes detectedTBX4
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Defining the clinical validity of genes reported to cause pulmonary arterial hypertension.
PMID: 37422716
Genet Med Β· 2023
1.00
2
Molecular Function and Contribution of
PMID: 36367783
Am J Respir Crit Care Med Β· 2023
0.90
3
TBX4 variants and pulmonary diseases: getting out of the 'Box'.
PMID: 32195678
Curr Opin Pulm Med Β· 2020
0.80
4
Novel risk genes and mechanisms implicated by exome sequencing of 2572 individuals with pulmonary arterial hypertension.
PMID: 31727138
Genome Med Β· 2019
0.70
5
Human genome meeting 2016 : Houston, TX, USA. 28 February - 2 March 2016.
PMID: 27294413
Hum Genomics Β· 2016
0.60