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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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HOXC11
homeobox C11
Chromosome 12 · 12q13.13
NCBI Gene: 3227Ensembl: ENSG00000123388.4HGNC: HGNC:5123UniProt: O43248
34PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
positive regulation of transcription by RNA polymerase IIRNA polymerase II cis-regulatory region sequence-specific DNA bindingDNA-binding transcription activator activity, RNA polymerase II-specificnucleoplasmgliomatosis cerebricolorectal adenocarcinomabile duct carcinomalung adenocarcinoma
✦AI Summary

HOXC11 is a sequence-specific transcription factor that functions as part of a developmental regulatory system providing cells with positional identity along the anterior-posterior axis 1. During embryonic development, HOXC11 is expressed in the posterior neural tube, dorsal root ganglia, prevertebrae, hindlimbs, and developing kidney, with particularly prominent expression in posterior urogenital structures 1. The protein promotes cellular differentiation by transcriptionally activating specific target genes, as demonstrated by its ability to induce S100beta expression during neuroblastoma cell differentiation into Schwannian cells 2. In pathological contexts, HOXC11 functions as an oncogene across multiple cancer types. It is upregulated in colon adenocarcinoma and kidney renal clear cell carcinoma, where high expression correlates with poor overall survival and promotes cell proliferation through inactivation of the PPARγ signaling pathway 3. In renal cell carcinoma, HOXC11 overexpression enhances proliferation and correlates with advanced tumor stage and shorter survival 4. The transcription factor also drives lung adenocarcinoma progression by directly binding to and upregulating SPHK1 5, while in ovarian cancer, it promotes tumorigenesis through transcriptional regulation of PROM2 and activation of the PI3K/AKT pathway 6. These findings establish HOXC11 as both a critical developmental regulator and significant oncogenic driver.

Sources cited
1
HOXC11 provides positional identity during development and is expressed in posterior neural structures, hindlimbs, and developing kidney
PMID: 9510030
2
HOXC11 promotes cellular differentiation by transcriptionally activating S100beta during neuroblastoma cell differentiation
PMID: 17488478
3
HOXC11 functions as an oncogene in colon adenocarcinoma and kidney renal clear cell carcinoma, promoting proliferation through PPARγ pathway inactivation
PMID: 31923422
4
HOXC11 overexpression in renal cell carcinoma enhances proliferation and correlates with poor prognosis
PMID: 25476856
5
HOXC11 drives lung adenocarcinoma progression through direct transcriptional regulation of SPHK1
PMID: 36823149
6
HOXC11 promotes ovarian cancer progression through transcriptional regulation of PROM2 and PI3K/AKT pathway activation
PMID: 39380001
Disease Associationsⓘ20
bile duct carcinomaOpen Targets
0.37Weak
colorectal adenocarcinomaOpen Targets
0.37Weak
gliomatosis cerebriOpen Targets
0.37Weak
lung adenocarcinomaOpen Targets
0.30Weak
non-small cell lung carcinomaOpen Targets
0.29Weak
colon adenocarcinomaOpen Targets
0.29Weak
melanomaOpen Targets
0.29Weak
esophageal adenocarcinomaOpen Targets
0.29Weak
gastric adenocarcinomaOpen Targets
0.28Weak
gastric carcinomaOpen Targets
0.28Weak
carcinoma of liver and intrahepatic biliary tractOpen Targets
0.28Weak
cutaneous melanomaOpen Targets
0.28Weak
hepatocellular carcinomaOpen Targets
0.28Weak
small cell lung carcinomaOpen Targets
0.28Weak
esophageal squamous cell carcinomaOpen Targets
0.28Weak
urinary bladder carcinomaOpen Targets
0.28Weak
gastrointestinal stromal tumorOpen Targets
0.28Weak
ovarian serous adenocarcinomaOpen Targets
0.28Weak
pulmonary large cell neuroendocrine carcinomaOpen Targets
0.28Weak
thyroid neoplasmOpen Targets
0.28Weak
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
TBX4Protein interaction91%HOXC10Protein interaction87%TBX5Protein interaction79%HOXD11Shared pathway25%MIXL1Shared pathway14%APELAShared pathway8%
Tissue Expression6 tissues
Brain
100%
Ovary
100%
Lung
50%
Bone Marrow
0%
Heart
0%
Liver
0%
Gene Interaction Network
Click a node to explore
HOXC11TBX4HOXC10TBX5HOXD11MIXL1APELA
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt O43248
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.12LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.74 [0.51–1.12]
RankingsWhere HOXC11 stands among ~20K protein-coding genes
  • #11,168of 20,598
    Most Researched34
  • #11,471of 17,882
    Most Constrained (LOEUF)1.12
Genes detectedHOXC11
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
HOXC11 functions as a novel oncogene in human colon adenocarcinoma and kidney renal clear cell carcinoma.
PMID: 31923422
Life Sci · 2020
1.00
2
Genetic and Epigenetic Regulation of the Innate Immune Response to Gout.
PMID: 36745138
Immunol Invest · 2023
0.90
3
Inhibition of HOXC11 by artesunate induces ferroptosis and suppresses ovarian cancer progression through transcriptional regulation of the PROM2/PI3K/AKT pathway.
PMID: 39380001
World J Surg Oncol · 2024
0.80
4
Overexpression of HOXC11 homeobox gene in clear cell renal cell carcinoma induces cellular proliferation and is associated with poor prognosis.
PMID: 25476856
Tumour Biol · 2015
0.70
5
HOXC6 and HOXC11 increase transcription of S100beta gene in BrdU-induced in vitro differentiation of GOTO neuroblastoma cells into Schwannian cells.
PMID: 17488478
J Cell Mol Med · 2007
0.60