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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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THUMPD3
THUMP domain 3 tRNA guanosine methyltransferase
Chromosome 3 · 3p25.3
NCBI Gene: 25917Ensembl: ENSG00000134077.17HGNC: HGNC:24493UniProt: Q9BV44
45PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
cytoplasmtRNA methyltransferase complexprotein bindingcytosolobesityocular hypotensionovarian dysfunctioninfectious arthritis
✦AI Summary

THUMPD3 is a catalytic subunit of the THUMPD3-TRM112 methyltransferase complex that specifically mediates S-adenosyl-L-methionine-dependent N2-methylation of guanosine nucleotides in tRNAs 1. The enzyme primarily catalyzes m2G6 modification in tRNAs and represents one of the major tRNA (guanine-N2)-methyltransferases 1. Additionally, THUMPD3 catalyzes N2-methylation of guanosine at position 7 of tRNA(Trp) 1. Beyond tRNA modification, THUMPD3 plays important roles in cellular processes including protein synthesis and cell proliferation 1. In cancer contexts, THUMPD3 demonstrates oncogenic properties by regulating alternative splicing of extracellular matrix transcripts, particularly maintaining expression of pro-tumor Fibronectin-1 isoforms in lung cancer cells 2. THUMPD3 depletion significantly impairs cancer cell fitness, reducing proliferation and migration 2. In pancreatic cancer, the THUMPD3/TRMT112 complex promotes cell growth and autophagy through TFEB translation regulation via impaired m2G modification of tRNA(Leu) 3. The enzyme is upregulated in multiple cancer types and correlates with poor prognosis, suggesting its potential as a therapeutic target 3.

Sources cited
1
THUMPD3 is a catalytic subunit of methyltransferase complex that catalyzes m2G modifications in tRNAs and is important for protein synthesis and cell proliferation
PMID: 37283053
2
THUMPD3 regulates alternative splicing of ECM transcripts in lung cancer and promotes proliferation and migration
PMID: 39656728
3
THUMPD3/TRMT112 complex is upregulated in pancreatic cancer, promotes cell growth and autophagy, and correlates with poor prognosis
PMID: 41530782
⚠Limited data available — This gene has 3 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ20
obesityOpen Targets
0.32Weak
ocular hypotensionOpen Targets
0.29Weak
ovarian dysfunctionOpen Targets
0.27Weak
infectious arthritisOpen Targets
0.26Weak
neurodegenerative diseaseOpen Targets
0.18Weak
esophageal diseaseOpen Targets
0.11Weak
gastroesophageal reflux diseaseOpen Targets
0.10Weak
hepatocellular carcinomaOpen Targets
0.08Suggestive
non-small cell lung carcinomaOpen Targets
0.08Suggestive
lung cancerOpen Targets
0.08Suggestive
gastric cancerOpen Targets
0.06Suggestive
cancerOpen Targets
0.03Suggestive
metabolic syndromeOpen Targets
0.03Suggestive
gestational diabetesOpen Targets
0.03Suggestive
non-neoplastic nevusOpen Targets
0.02Suggestive
sign or symptomOpen Targets
0.02Suggestive
facial morphologyOpen Targets
0.02Suggestive
neoplasmOpen Targets
0.02Suggestive
type 2 diabetes mellitusOpen Targets
0.02Suggestive
ovarian cancerOpen Targets
0.02Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
TRMT44Shared pathway100%TRMT10AShared pathway100%TRMT5Shared pathway100%TRMOShared pathway100%SETD5Protein interaction73%TRMT112Protein interaction64%
Tissue Expression6 tissues
Heart
100%
Bone Marrow
90%
Brain
73%
Liver
55%
Lung
43%
Ovary
42%
Gene Interaction Network
Click a node to explore
THUMPD3TRMT44TRMT10ATRMT5TRMOSETD5TRMT112
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q9BV44
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.00LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.76 [0.58–1.00]
RankingsWhere THUMPD3 stands among ~20K protein-coding genes
  • #9,533of 20,598
    Most Researched45
  • #9,710of 17,882
    Most Constrained (LOEUF)1.00
Genes detectedTHUMPD3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
THUMPD3-AS1 Is Correlated with Gastric Cancer and Regulates Cell Function through miR-1252-3p and CXCL17.
PMID: 36017917
Crit Rev Eukaryot Gene Expr · 2022
1.00
2
THUMPD3 regulates alternative splicing of ECM transcripts in human lung cancer cells and promotes proliferation and migration.
PMID: 39656728
PLoS One · 2024
0.90
3
N 2-methylguanosine modifications on human tRNAs and snRNA U6 are important for cell proliferation, protein translation and pre-mRNA splicing.
PMID: 37283053
Nucleic Acids Res · 2023
0.80
4
LncRNA THUMPD3-AS1 Regulates Behavioral and Synaptic Structural Abnormalities in Schizophrenia via miR-485-5p and ARHGAP8.
PMID: 41168987
Adv Sci (Weinh) · 2026
0.70
5
tRNA m
PMID: 41530782
Mol Cancer · 2026
0.60