HomeAboutRankingsData Sources
Β© 2026 GeneE
🧬
GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
TRMT10A
tRNA methyltransferase 10A
Chromosome 4 Β· 4q23
NCBI Gene: 93587Ensembl: ENSG00000145331.15HGNC: HGNC:28403UniProt: Q8TBZ6
26PubMed Papers
21Diseases
0Drugs
21Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
tRNA bindingRNA bindingprotein bindingnucleolusmicrocephaly, short stature, and impaired glucose metabolism 1primary microcephaly-mild intellectual disability-young-onset diabetes syndromegenetic disorderPrimary microcephaly
✦AI Summary

TRMT10A (tRNA methyltransferase 10A) is an S-adenosyl-L-methionine-dependent methyltransferase that catalyzes the formation of N1-methylguanine at position 9 (m1G9) in nuclear-encoded tRNAs 1. The enzyme localizes to the nucleolus and nucleus, where tRNA modifications occur 2. TRMT10A methylates a subset of nuclear tRNAs including tRNA-ArgCCT and initiator methionine tRNA, with loss of G9 methylation decreasing steady-state tRNA levels and altering post-transcriptional modifications 13. TRMT10A deficiency disrupts the cytosolic tRNA pool required for protein synthesis and impairs ribosome functionality at specific codons 3. Biallelic TRMT10A mutations cause an early-onset syndromic disease characterized by diabetes mellitus, microcephaly, intellectual disability, epilepsy, and short stature 24. TRMT10A deficiency induces pancreatic Ξ²-cell apoptosis and impairs brain development through disrupted translation of neuronal structural proteins 23. Recent evidence reveals TRMT10A participates in DNA damage response via phosphorylation by ATM, regulating homologous recombination repair and BRCA1 recruitment 5. Additionally, TRMT10A suppression promotes glioblastoma vasculogenic mimicry through enhanced tRNA fragment-22 generation and HIF1A upregulation 6. Clinically, TRMT10A sequencing is recommended for early-onset diabetes with intellectual disability and microcephaly, particularly in non-autoimmune, non-obese presentations 7.

Sources cited
1
TRMT10A is m1G9-specific methyltransferase of nuclear tRNAs; lack of G9 methylation decreases initiator tRNAiMet levels and alters post-transcriptional modifications
PMID: 32392304
2
TRMT10A mutations cause young-onset diabetes, microcephaly, and intellectual disability; TRMT10A deficiency induces Ξ²-cell apoptosis and affects brain development
PMID: 24204302
3
TRMT10A mutations cause syndrome with early-onset diabetes, microcephaly, epilepsy, intellectual disability, and neurological involvement including brain/cerebellar malformations
PMID: 39440920
4
ATM phosphorylates TRMT10A at serine-28 after DNA damage, promoting BRCA1 recruitment and homologous recombination repair; TRMT10A deletion sensitizes cells to PARP inhibition
PMID: 41071892
5
TRMT10A knockdown reduces m1G9 modification of tRNA-ArgCCT, increases tRF-22 expression, and promotes glioblastoma vasculogenic mimicry through HIF1A upregulation
PMID: 40140670
6
TRMT10A dysfunction decreases tRNAGln(CUG) and initiator methionine tRNA levels, causes ribosome slowdown at Gln(CAG) codons, perturbs translation of neuronal structural proteins, and impairs synaptic plasticity and memory
PMID: 38950903
7
TRMT10A mutations associated with monogenic early-onset diabetes; TRMT10A sequencing recommended in early-onset diabetes with intellectual disability and microcephaly
PMID: 39243962
Disease Associationsβ“˜21
microcephaly, short stature, and impaired glucose metabolism 1Open Targets
0.73Strong
primary microcephaly-mild intellectual disability-young-onset diabetes syndromeOpen Targets
0.64Moderate
genetic disorderOpen Targets
0.47Moderate
Primary microcephalyOpen Targets
0.37Weak
intellectual developmental disorder, autosomal recessive 68Open Targets
0.37Weak
placental retentionOpen Targets
0.27Weak
Abnormality of the nervous systemOpen Targets
0.27Weak
liver diseaseOpen Targets
0.18Weak
Abnormality of the liverOpen Targets
0.14Weak
cirrhosis of liverOpen Targets
0.11Weak
gliomaOpen Targets
0.07Suggestive
Autosomal dominant primary hypomagnesemia with hypocalciuriaOpen Targets
0.06Suggestive
familial primary hypomagnesemia with normocalciuria and normocalcemiaOpen Targets
0.06Suggestive
intestinal hypomagnesemia 1Open Targets
0.05Suggestive
Primary hypomagnesemia with secondary hypocalcemiaOpen Targets
0.05Suggestive
hypoparathyroidism, familial isolated, 2Open Targets
0.04Suggestive
fish eye diseaseOpen Targets
0.04Suggestive
Fish-eye diseaseOpen Targets
0.04Suggestive
familial isolated hypoparathyroidism due to agenesis of parathyroid glandOpen Targets
0.03Suggestive
hereditary hyperferritinemia with congenital cataractsOpen Targets
0.03Suggestive
Microcephaly, short stature, and impaired glucose metabolism 1UniProt
Pathogenic Variants21
NM_001134665.3(TRMT10A):c.277C>T (p.Arg93Ter)Pathogenic
Abnormality of the nervous system|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 93
NM_001134665.3(TRMT10A):c.226C>T (p.Arg76Ter)Pathogenic
See cases|Microcephaly, short stature, and impaired glucose metabolism 1|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 76
NM_001134665.3(TRMT10A):c.79G>T (p.Glu27Ter)Pathogenic
not provided|Inborn genetic diseases
β˜…β˜…β˜†β˜†2025β†’ Residue 27
NM_001134665.3(TRMT10A):c.193C>T (p.Arg65Ter)Pathogenic
not provided|Microcephaly, short stature, and impaired glucose metabolism 1
β˜…β˜…β˜†β˜†2025β†’ Residue 65
NM_001134665.3(TRMT10A):c.616G>A (p.Gly206Arg)Pathogenic
Microcephaly, short stature, and impaired glucose metabolism 1|Inborn genetic diseases|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 206
NM_001134665.3(TRMT10A):c.127C>T (p.Arg43Ter)Pathogenic
not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 43
NM_001134665.3(TRMT10A):c.379C>T (p.Arg127Ter)Pathogenic
Microcephaly, short stature, and impaired glucose metabolism 1|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 127
NM_001134665.3(TRMT10A):c.23dup (p.Phe9fs)Pathogenic
Microcephaly, short stature, and impaired glucose metabolism 1|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 9
NM_001134665.3(TRMT10A):c.492G>A (p.Trp164Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 164
NM_001134665.3(TRMT10A):c.185+1_185+13delLikely pathogenic
not provided
β˜…β˜†β˜†β˜†2025
NM_001134665.3(TRMT10A):c.348+1G>TLikely pathogenic
not provided
β˜…β˜†β˜†β˜†2025
NM_001134665.3(TRMT10A):c.496-1G>ALikely pathogenic
Microcephaly, short stature, and impaired glucose metabolism 1
β˜…β˜†β˜†β˜†2025
NM_001134665.3(TRMT10A):c.420+1G>ALikely pathogenic
Microcephaly, short stature, and impaired glucose metabolism 1
β˜…β˜†β˜†β˜†2025
NM_001134665.3(TRMT10A):c.151C>T (p.Gln51Ter)Pathogenic
Microcephaly, short stature, and impaired glucose metabolism 1
β˜…β˜†β˜†β˜†2024β†’ Residue 51
NM_001134665.3(TRMT10A):c.387C>A (p.Tyr129Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 129
NM_001134665.3(TRMT10A):c.405_406del (p.Leu136fs)Likely pathogenic
Microcephaly, short stature, and impaired glucose metabolism 1
β˜…β˜†β˜†β˜†2023β†’ Residue 136
NM_001134665.3(TRMT10A):c.346A>T (p.Lys116Ter)Pathogenic
Microcephaly, short stature, and impaired glucose metabolism 1
β˜…β˜†β˜†β˜†2023β†’ Residue 116
NM_001134665.3(TRMT10A):c.483G>A (p.Trp161Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2022β†’ Residue 161
NM_001134665.3(TRMT10A):c.41del (p.Asn14fs)Likely pathogenic
Microcephaly, short stature, and impaired glucose metabolism 1
β˜…β˜†β˜†β˜†2022β†’ Residue 14
NM_001134665.3(TRMT10A):c.495+2T>CLikely pathogenic
not provided
β˜…β˜†β˜†β˜†2021
View on ClinVar β†—
Related Genes
THUMPD3Shared pathway100%TRMOShared pathway100%TRMT44Shared pathway100%TRMT5Protein interaction85%TYW2Protein interaction84%METTL1Protein interaction76%
Tissue Expression6 tissues
Liver
100%
Brain
50%
Ovary
43%
Heart
43%
Lung
31%
Bone Marrow
28%
Gene Interaction Network
Click a node to explore
TRMT10ATHUMPD3TRMOTRMT44TRMT5TYW2METTL1
PROTEIN STRUCTURE
Preparing viewer…
PDB4FMW Β· 2.00 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
1.18LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.89 [0.68–1.18]
RankingsWhere TRMT10A stands among ~20K protein-coding genes
  • #12,907of 20,598
    Most Researched26
  • #2,168of 5,498
    Most Pathogenic Variants21
  • #12,391of 17,882
    Most Constrained (LOEUF)1.18
Genes detectedTRMT10A
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Functional characterization of the human tRNA methyltransferases TRMT10A and TRMT10B.
PMID: 32392304
Nucleic Acids Res Β· 2020
1.00
2
New Insights Into TRMT10A Syndrome: Case Report and Literature Review.
PMID: 39440920
Am J Med Genet B Neuropsychiatr Genet Β· 2025
0.90
3
Targeting the ATM-TRMT10A-BRCA1 axis confers synthetic lethality to PARP inhibition in metastatic castration-resistant prostate cancer.
PMID: 41071892
Sci Adv Β· 2025
0.80
4
Distinct substrate specificities of the human tRNA methyltransferases TRMT10A and TRMT10B.
PMID: 31292261
RNA Β· 2019
0.70
5
tRNA methyltransferase homolog gene TRMT10A mutation in young onset diabetes and primary microcephaly in humans.
PMID: 24204302
PLoS Genet Β· 2013
0.60