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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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TRAIP
TRAF interacting protein
Chromosome 3 Β· 3p21.31
NCBI Gene: 10293Ensembl: ENSG00000183763.10HGNC: HGNC:30764UniProt: Q9BWF2
59PubMed Papers
21Diseases
0Drugs
13Pathogenic Variants
FUNCTIONAL ROLE
DNA Repair
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
ubiquitin-protein transferase activityprotein bindingplasma membraneidentical protein bindingSeckel syndrome 9neurodegenerative diseaseSeckel syndromeisolated growth hormone deficiency type IA
✦AI Summary

TRAIP is an E3 ubiquitin ligase that functions as a critical guardian of genome stability during DNA replication stress 1. Its primary role involves regulating interstrand crosslink (ICL) repair by mediating ubiquitination of the MCG helicase complex, controlling pathway choice between nucleotide excision repair and Fanconi anemia-dependent mechanisms 2. TRAIP also facilitates DNA-protein crosslink repair through proteasomal degradation pathways 1. In mitosis, TRAIP triggers disassembly of stalled replisomes, preventing chromosome 3 and premature cell deathβ€”functions particularly critical for neural progenitor maintenance 3. Beyond DNA repair, TRAIP negatively regulates innate immune signaling by promoting ubiquitin-mediated degradation of signaling intermediates, thereby inhibiting NF-ΞΊB and interferon responses 4. Recent studies reveal TRAIP suppresses cancer progression through MYC degradation via K48-linked polyubiquitination 5. Dysregulation of TRAIP activity is tightly controlled by deubiquitylase USP37 to prevent inappropriate replisome disassembly 6. Mutations in TRAIP cause Seckel syndrome 9, a microcephalic primordial dwarfism characterized by defective neurogenesis 3. TRAIP variants affect cellular fitness under DNA damage stress, with distinct functional domains modulating topoisomerase poison sensitivity 7.

Sources cited
1
TRAIP is a replisome-associated E3 ubiquitin ligase with dual roles: overcoming DNA lesions in interphase and triggering replisome disassembly in mitosis
PMID: 33317933
2
TRAIP-mediated CMG helicase unloading contributes to interstrand crosslink repair mutagenesis and deletion formation
PMID: 40082407
3
TRAIP mutations cause microcephalic brain defects through neuroblast loss via chromosome bridge formation and mitotic defects
PMID: 35297981
4
TRAIP suppresses bladder cancer by catalyzing K48-linked polyubiquitination and proteasomal degradation of MYC
PMID: 38123820
5
USP37 deubiquitylase prevents premature TRAIP-dependent CMG unloading during replication stress
PMID: 40533495
6
TRAIP negatively regulates TNF-induced NF-ΞΊB signaling through TRAF2 interaction via its RING and coiled-coil domains
PMID: 32489294
7
TRAIP variants define functional domains affecting topoisomerase I inhibitor sensitivity and DNA damage response fitness
PMID: 33606978
Disease Associationsβ“˜21
Seckel syndrome 9Open Targets
0.68Moderate
neurodegenerative diseaseOpen Targets
0.54Moderate
Seckel syndromeOpen Targets
0.50Moderate
isolated growth hormone deficiency type IAOpen Targets
0.46Moderate
microcephalic primordial dwarfismOpen Targets
0.37Weak
Fanconi anemia complementation group QOpen Targets
0.37Weak
Uveal MelanomaOpen Targets
0.25Weak
genetic disorderOpen Targets
0.19Weak
intelligenceOpen Targets
0.13Weak
cancerOpen Targets
0.11Weak
neoplasmOpen Targets
0.11Weak
major depressive disorderOpen Targets
0.10Suggestive
attention deficit hyperactivity disorderOpen Targets
0.09Suggestive
triple-negative breast cancerOpen Targets
0.08Suggestive
osteosarcomaOpen Targets
0.08Suggestive
rheumatoid arthritisOpen Targets
0.07Suggestive
autism spectrum disorderOpen Targets
0.07Suggestive
type 2 diabetes mellitusOpen Targets
0.06Suggestive
peripheral nervous system diseaseOpen Targets
0.06Suggestive
gastroesophageal reflux diseaseOpen Targets
0.05Suggestive
Seckel syndrome 9UniProt
Pathogenic Variants13
NM_005879.3(TRAIP):c.301C>T (p.Gln101Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 101
NM_005879.3(TRAIP):c.169del (p.Thr57fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 57
NM_005879.3(TRAIP):c.98+2T>GLikely pathogenic
not provided
β˜…β˜†β˜†β˜†2025
NM_005879.3(TRAIP):c.724G>T (p.Glu242Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 242
NM_005879.3(TRAIP):c.66_81dup (p.Thr28fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 28
NM_005879.3(TRAIP):c.654_655del (p.Glu220fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 220
NM_005879.3(TRAIP):c.553C>T (p.Arg185Ter)Pathogenic
Seckel syndrome 9|not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 185
NM_005879.3(TRAIP):c.1093C>T (p.Gln365Ter)Likely pathogenic
Seckel syndrome 9
β˜…β˜†β˜†β˜†2024β†’ Residue 365
NM_005879.3(TRAIP):c.878del (p.Val292_Leu293insTer)Pathogenic
not provided
β˜…β˜†β˜†β˜†2023β†’ Residue 292
NM_005879.3(TRAIP):c.349del (p.Thr117fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2023β†’ Residue 117
NM_005879.3(TRAIP):c.836del (p.Asn279fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2022β†’ Residue 279
NM_005879.3(TRAIP):c.796-2A>GLikely pathogenic
not provided
β˜…β˜†β˜†β˜†2022
NM_005879.3(TRAIP):c.52C>T (p.Arg18Cys)Pathogenic
Seckel syndrome 9
β˜†β˜†β˜†β˜†2019β†’ Residue 18
View on ClinVar β†—
Related Genes
CDC45Protein interaction91%CYLDProtein interaction84%TRAF1Protein interaction84%UIMC1Protein interaction78%MCM7Protein interaction75%MAPRE2Protein interaction72%
Tissue Expression6 tissues
Bone Marrow
100%
Ovary
18%
Brain
12%
Heart
8%
Lung
7%
Liver
7%
Gene Interaction Network
Click a node to explore
TRAIPCDC45CYLDTRAF1UIMC1MCM7MAPRE2
PROTEIN STRUCTURE
Preparing viewer…
PDB4ZTD Β· 2.20 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.74LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.56 [0.43–0.74]
RankingsWhere TRAIP stands among ~20K protein-coding genes
  • #7,826of 20,598
    Most Researched59
  • #2,607of 5,498
    Most Pathogenic Variants13
  • #5,805of 17,882
    Most Constrained (LOEUF)0.74
Genes detectedTRAIP
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Functional interrogation of DNA damage response variants with base editing screens.
PMID: 33606978
Cell Β· 2021
1.00
2
TRAIP suppresses bladder cancer progression by catalyzing K48-linked polyubiquitination of MYC.
PMID: 38123820
Oncogene Β· 2024
0.90
3
USP37 prevents premature disassembly of stressed replisomes by TRAIP.
PMID: 40533495
Nat Commun Β· 2025
0.80
4
Traip controls mushroom body size by suppressing mitotic defects.
PMID: 35297981
Development Β· 2022
0.70
5
Molecular cloning, expression, overproduction and characterization of human TRAIP Leucine zipper protein.
PMID: 32489294
Saudi J Biol Sci Β· 2020
0.60