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6 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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TYW3
tRNA-yW synthesizing protein 3 homolog
Chromosome 1 · 1p31.1
NCBI Gene: 127253Ensembl: ENSG00000162623.17HGNC: HGNC:24757UniProt: Q6IPR3
19PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingtRNA methyltransferase activitytRNA methylationwybutosine biosynthetic processamyotrophic lateral sclerosisneurodegenerative diseaseadolescent idiopathic scoliosisresponse to paracetamol
✦AI Summary

TYW3 is a probable S-adenosyl-L-methionine-dependent methyltransferase that functions as a component of the wybutosine biosynthesis pathway 1. Wybutosine is a hypermodified guanosine nucleoside found at the 3' position adjacent to the anticodon of eukaryotic phenylalanine tRNA, where it stabilizes codon-anticodon interactions during ribosomal decoding 1. TYW3 acts within a multi-component enzymatic complex with TYW2 and TYW4 to catalyze sequential reactions in wybutosine synthesis from precursor tRNA 1. Beyond its canonical tRNA modification role, TYW3 has emerged as a metabolic regulator with disease relevance. Genetic variants near TYW3/CRYZ are associated with circulating resistin levels, an inflammatory hormone linked to insulin resistance and cardiovascular disease risk 2. TYW3 promoter methylation changes during metabolic dysfunction-associated steatotic liver disease (MASLD) progression correlate inversely with gene expression and associate with hepatocellular carcinoma survival outcomes 3. Additionally, TYW3/CRYZ methylation patterns are associated with birth-weight discordance in twins, suggesting developmental programming effects on metabolic health 4. TYW3 has also been identified as a prognostic feature gene in hepatocellular carcinoma risk stratification 5, and DNA methylation near TYW3 shows suggestive association with tic spectrum disorder potentially through mTOR pathway involvement 6.

Sources cited
1
TYW3 is essential for wybutosine biosynthesis; acts as component of multi-enzyme complex with TYW2 and TYW4; catalyzes sequential reactions using S-adenosylmethionine
PMID: 16642040
2
Genetic variants in TYW3/CRYZ locus associated with circulating resistin levels; SNP rs3931020 shows association with coronary heart disease risk
PMID: 22843503
3
TYW3 promoter methylation inversely correlates with gene expression during MASLD progression; associated with HCC survival outcomes
PMID: 39982030
4
TYW3 region shows significant differential methylation in birth-weight discordant twins; both TYW3 and CRYZ associated with metabolism
PMID: 26831219
5
TYW3 identified as prognostic feature gene in HCC with distinct expression patterns; used in RNA processing gene-based risk stratification
PMID: 40719833
6
CRYZ/TYW3 identified as top gene in tic spectrum disorder methylation analysis; related to PI3K/AKT/mTOR pathway
PMID: 34680906
Disease Associationsⓘ20
amyotrophic lateral sclerosisOpen Targets
0.26Weak
neurodegenerative diseaseOpen Targets
0.26Weak
adolescent idiopathic scoliosisOpen Targets
0.26Weak
response to paracetamolOpen Targets
0.24Weak
ovarian neoplasmOpen Targets
0.15Weak
kidney cancerOpen Targets
0.11Weak
skin agingOpen Targets
0.03Suggestive
jaw diseaseOpen Targets
0.03Suggestive
WheezingOpen Targets
0.03Suggestive
Cerebral degenerationOpen Targets
0.03Suggestive
Benign Thyroid Gland NeoplasmOpen Targets
0.02Suggestive
hepatocellular carcinomaOpen Targets
0.02Suggestive
Parkinson diseaseOpen Targets
0.01Suggestive
non-alcoholic fatty liver diseaseOpen Targets
0.01Suggestive
Insulin resistanceOpen Targets
0.00Suggestive
astrocytomaOpen Targets
0.00Suggestive
cancerOpen Targets
0.00Suggestive
Charcot-Marie-Tooth diseaseOpen Targets
0.00Suggestive
neoplasmOpen Targets
0.00Suggestive
progressive supranuclear palsyOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
LCMT2Protein interaction80%TYW2Protein interaction80%TYW5Protein interaction79%TRMT5Protein interaction74%TYW1Protein interaction68%THUMPD3Shared pathway50%
Tissue Expression6 tissues
Heart
100%
Bone Marrow
71%
Ovary
60%
Liver
39%
Lung
33%
Brain
30%
Gene Interaction Network
Click a node to explore
TYW3LCMT2TYW2TYW5TRMT5TYW1THUMPD3
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q6IPR3
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.65LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.15 [0.82–1.65]
RankingsWhere TYW3 stands among ~20K protein-coding genes
  • #14,588of 20,598
    Most Researched19
  • #15,889of 17,882
    Most Constrained (LOEUF)1.65
Genes detectedTYW3
Sources retrieved6 papers
Response time—
📄 Sources
6▼
1
DNA Methylation and Target Gene Expression in Fatty Liver Progression From Simple Steatosis to Advanced Fibrosis.
PMID: 39982030
Liver Int · 2025
1.00
2
Genome-wide association analysis identifies TYW3/CRYZ and NDST4 loci associated with circulating resistin levels.
PMID: 22843503
Hum Mol Genet · 2012
0.83
3
Biosynthesis of wybutosine, a hyper-modified nucleoside in eukaryotic phenylalanine tRNA.
PMID: 16642040
EMBO J · 2006
0.67
4
EWAS of Monozygotic Twins Implicate a Role of mTOR Pathway in Pathogenesis of Tic Spectrum Disorder.
PMID: 34680906
Genes (Basel) · 2021
0.50
5
A Bioinformatics Analysis on the Subtypes of Hepatocellular Carcinoma Related to RNA Processing Genes to Reveal Prognosis and Immune Microenvironment Features.
PMID: 40719833
Dig Dis Sci · 2025
0.33