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6 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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UTP25
UTP25 small subunit processome component
Chromosome 1 · 1q32.2
NCBI Gene: 27042Ensembl: ENSG00000117597.19HGNC: HGNC:28440UniProt: Q68CQ4
59PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
RNA bindingprotein bindingprotein catabolic processprotein destabilizationcleft palatecleft lipandrogenetic alopeciaorofacial cleft
✦AI Summary

UTP25 is a conserved small subunit (SSU) processome component essential for ribosomal biogenesis and embryonic development. Mechanistically, UTP25 functions in pre-rRNA processing, particularly 18S rRNA maturation at sites A₀, A₁, and A₂ 1. The protein localizes to the nucleolus through a UTP3-dependent translocation pathway, where UTP3 facilitates its nucleolar entry 2. UTP25 interacts with multiple SSU processome subcomplexes including U3 snoRNA, Mpp10, and components of the t-Utp/UtpA, UtpB, and U3 snoRNP complexes 1, with the DUF1253 domain mediating its interaction with UTP3. Beyond rRNA processing, UTP25 has developmental roles: it controls expansion of digestive organs and liver, and is essential for embryonic development partly through p53 pathway regulation. UTP25 mediates proteasome-independent p53 degradation in coordination with CAPN3 through the nucleolus-localized Def-CAPN3 pathway 3, which regulates both ribosome biogenesis and cell-cycle progression. Clinically, these functions implicate UTP25 in conditions involving ribosomal dysfunction and dysregulated p53 signaling, though direct disease associations require further investigation.

Sources cited
1
UTP25 is an SSU processome component required for 18S rRNA maturation; interacts with U3 snoRNA, Mpp10, and SSU processome subcomplexes
PMID: 20884785
2
UTP25 nucleolar localization is facilitated by UTP3-dependent translocation pathway
PMID: 39036955
3
Def-CAPN3 pathway controls nucleolus-localized protein degradation including p53, essential for ribosome biogenesis and cell-cycle control
PMID: 34452850
⚠Limited data available — This gene has 3 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ20
cleft palateOpen Targets
0.47Moderate
cleft lipOpen Targets
0.43Moderate
androgenetic alopeciaOpen Targets
0.32Weak
orofacial cleftOpen Targets
0.30Weak
dental cariesOpen Targets
0.22Weak
Pallister-Hall syndromeOpen Targets
0.08Suggestive
neoplasmOpen Targets
0.07Suggestive
respiratory system diseaseOpen Targets
0.06Suggestive
neuroblastomaOpen Targets
0.04Suggestive
Abruptio PlacentaeOpen Targets
0.04Suggestive
Myocardial IschemiaOpen Targets
0.03Suggestive
Down syndromeOpen Targets
0.01Suggestive
non-alcoholic fatty liver diseaseOpen Targets
0.01Suggestive
Crohn's diseaseOpen Targets
0.01Suggestive
fungal infectious diseaseOpen Targets
0.01Suggestive
squamous cell carcinomaOpen Targets
0.01Suggestive
gastric cancerOpen Targets
0.01Suggestive
infectionOpen Targets
0.01Suggestive
acute myeloid leukemiaOpen Targets
0.01Suggestive
colitisOpen Targets
0.01Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
IMP3Protein interaction100%ABT1Protein interaction100%UTP6Protein interaction100%FCF1Protein interaction100%NOL6Protein interaction99%UTP18Protein interaction99%
Tissue Expression6 tissues
Ovary
100%
Liver
95%
Brain
81%
Heart
68%
Bone Marrow
64%
Lung
54%
Gene Interaction Network
Click a node to explore
UTP25IMP3ABT1UTP6FCF1NOL6UTP18
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q68CQ4
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.76LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.60 [0.47–0.76]
RankingsWhere UTP25 stands among ~20K protein-coding genes
  • #7,831of 20,598
    Most Researched59
  • #6,085of 17,882
    Most Constrained (LOEUF)0.76
Genes detectedUTP25
Sources retrieved6 papers
Response time—
📄 Sources
6▼
1
A UTP3-dependent nucleolar translocation pathway facilitates pre-rRNA 5'ETS processing.
PMID: 39036955
Nucleic Acids Res · 2024
1.00
2
The DEAD-box RNA helicase-like Utp25 is an SSU processome component.
PMID: 20884785
RNA · 2010
0.83
3
Nucleolus-localized Def-CAPN3 protein degradation pathway and its role in cell cycle control and ribosome biogenesis.
PMID: 34452850
J Genet Genomics · 2021
0.67
4
An 86 amino acids motif in CAPN3 is essential for formation of the nucleolus-localized Def-CAPN3 complex.
PMID: 35878425
Biochem Biophys Res Commun · 2022
0.50
5
Tissue and cancer-specific expression of DIEXF is epigenetically mediated by an Alu repeat.
PMID: 32041475
Epigenetics · 2020
0.33