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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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VAMP3
vesicle associated membrane protein 3
Chromosome 1 · 1p36.23
NCBI Gene: 9341Ensembl: ENSG00000049245.13HGNC: HGNC:12644UniProt: Q15836
125PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transporter
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
positive regulation of immunoglobulin productionmucus secretionregulation of histamine secretion by mast cellprotein bindingParkinson diseaseAlzheimer diseaseneurodegenerative diseaselysosomal storage disease
✦AI Summary

VAMP3 is a SNARE protein that mediates vesicle fusion during intracellular membrane trafficking. Its primary function involves facilitating retrograde transport from late endosomes to the trans-Golgi network and regulating vesicle-mediated secretion 1. Mechanistically, VAMP3 functions as a v-SNARE that interacts with t-SNAREs (such as syntaxin 4 and SNAP23) to enable membrane fusion events critical for protein and microRNA secretion 2. VAMP3 participates in diverse cellular processes including autophagy-dependent and -independent secretion pathways, where it mediates fusion of cargo-containing vesicles with the plasma membrane 34. Disease relevance is substantial across multiple pathologies. VAMP3 genetic variants are associated with periodontitis susceptibility, sharing loci with atherosclerotic cardiovascular disease, suggesting common inflammatory pathways 5. In neuroblastoma, reduced VAMP3 expression correlates with worse outcomes, and VAMP3 suppression promotes cancer cell proliferation and inhibits apoptosis 1. VAMP3 is implicated in immune evasion within triple-negative breast cancer through CD73 membrane translocation 6. Additionally, VAMP3 participates in wound healing through autophagy regulation and facilitates bacterial meningitis pathogenesis by mediating transferrin receptor transcytosis across the blood-brain barrier 78. Clinically, VAMP3 represents a potential therapeutic target for cancer treatment and infectious disease prevention.

Sources cited
1
VAMP3 is an miR-124 target; reduced VAMP3 correlates with worse neuroblastoma outcomes and stimulates cell proliferation while suppressing apoptosis
PMID: 37834325
2
VAMP3 and SNAP23 mediate endothelial microRNA secretion in response to disturbed blood flow and contribute to smooth muscle hyperplasia
PMID: 28716920
3
VAMP3 genetic locus variants are associated with periodontitis susceptibility and share associations with atherosclerotic cardiovascular disease
PMID: 32385877
4
VAMP3 mediates CD73 loading onto vesicles for membrane translocation, enabling immune evasion in triple-negative breast cancer
PMID: 40229283
5
VAMP3 colocalizes with LC3B and mediates secretory autophagy in cancer-associated fibroblasts for IL6 secretion
PMID: 40383937
6
VAMP3 functions in the STX13-SNAP23-VAMP3 SNARE complex to mediate unconventional protein secretion including galectin-9
PMID: 40335523
7
VAMP3-syntaxin 4 interaction mediates basolateral membrane fusion during transferrin receptor transcytosis across the blood-brain barrier and facilitates meningitis bacteria penetration
PMID: 40601634
8
VAMP3 expression increased in response to ADSC-exosome treatment, contributing to autophagy-mediated diabetic wound healing
PMID: 38434722
Disease Associationsⓘ20
Parkinson diseaseOpen Targets
0.28Weak
Alzheimer diseaseOpen Targets
0.28Weak
neurodegenerative diseaseOpen Targets
0.28Weak
lysosomal storage diseaseOpen Targets
0.28Weak
multiple sclerosisOpen Targets
0.28Weak
Hashimoto's thyroiditisOpen Targets
0.20Weak
insomniaOpen Targets
0.19Weak
Epiretinal membraneOpen Targets
0.17Weak
nervous system diseaseOpen Targets
0.15Weak
inherited hemoglobinopathyOpen Targets
0.15Weak
Abnormality of the gastrointestinal tractOpen Targets
0.14Weak
substance abuseOpen Targets
0.14Weak
alcohol drinkingOpen Targets
0.14Weak
hemolytic anemiaOpen Targets
0.14Weak
psoriatic arthritisOpen Targets
0.14Weak
revision of total joint arthroplastyOpen Targets
0.12Weak
hyperpituitarismOpen Targets
0.12Weak
diastolic heart failureOpen Targets
0.11Weak
attention deficit hyperactivity disorderOpen Targets
0.11Weak
ovarian neoplasmOpen Targets
0.10Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
STX1AProtein interaction100%SNAP25Protein interaction100%STX3Protein interaction100%VTI1AProtein interaction100%VAMP7Protein interaction100%STX1BProtein interaction100%
Tissue Expression6 tissues
Brain
100%
Heart
84%
Bone Marrow
82%
Lung
71%
Ovary
51%
Liver
30%
Gene Interaction Network
Click a node to explore
VAMP3STX1ASNAP25STX3VTI1AVAMP7STX1B
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q15836
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.97LoF Tolerant
pLIⓘ
0.01Tolerant
Observed/Expected LoF0.59 [0.37–0.97]
RankingsWhere VAMP3 stands among ~20K protein-coding genes
  • #3,778of 20,598
    Most Researched125 · top quartile
  • #9,260of 17,882
    Most Constrained (LOEUF)0.97
Genes detectedVAMP3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
The role of inflammation and genetics in periodontal disease.
PMID: 32385877
Periodontol 2000 · 2020
1.00
2
miR-124 and VAMP3 Act Antagonistically in Human Neuroblastoma.
PMID: 37834325
Int J Mol Sci · 2023
0.90
3
MGAT1-Guided complex N-Glycans on CD73 regulate immune evasion in triple-negative breast cancer.
PMID: 40229283
Nat Commun · 2025
0.80
4
Adipose mesenchymal stem cell-derived exosomes promote skin wound healing in diabetic mice by regulating epidermal autophagy.
PMID: 38434722
Burns Trauma · 2024
0.70
5
TRIM16 mediates secretory autophagy in head and neck cancer-associated fibroblasts.
PMID: 40383937
Autophagy · 2025
0.60