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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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VPS4B
vacuolar protein sorting 4 homolog B
Chromosome 18 · 18q21.33
NCBI Gene: 9525Ensembl: ENSG00000119541.11HGNC: HGNC:10895UniProt: O75351
131PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transporter
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
nucleus organizationnegative regulation of exosomal secretionpositive regulation of exosomal secretionpositive regulation of centriole elongationHIV infectiondentin dysplasia type Icystic kidney diseaseenteritis
✦AI Summary

VPS4B (vacuolar protein sorting 4 homolog B) is an AAA-ATPase that functions as a critical component of the ESCRT (endosomal sorting complex required for transport) machinery, primarily responsible for disassembling ESCRT-III complexes through ATP hydrolysis 1. The protein plays essential roles in multiple membrane remodeling processes, including exosome biogenesis, cytokinesis abscission, and autophagy regulation. VPS4B modulates exosome secretion, with its depletion actually increasing EV-associated protein secretion 1. In cancer biology, VPS4B demonstrates dual functions: it promotes autophagic cell death in breast cancer through ESCRT-III assembly with CHMP2B 2, while its overexpression in hepatocellular carcinoma correlates with poor prognosis and accelerated cell proliferation 3. VPS4B also orchestrates nuclear envelope stress responses by regulating ESCRT-III dynamics, with insufficient expression leading to inadequate stress responses and DNA damage 4. Additionally, the protein facilitates lipid droplet transfer from adipocytes to cancer cells through O-GlcNAc modification-dependent mechanisms 5. Unlike VPS4A, VPS4B appears to have a more canonical role in membrane remodeling processes 6, making it a potential therapeutic target across various diseases 7.

Sources cited
1
VPS4B functions in ESCRT machinery for exosome biogenesis and its depletion increases EV secretion
PMID: 24105262
2
VPS4B binds to CHMP2B in ESCRT-III complex assembly promoting autophagic death in breast cancer
PMID: 37005481
3
VPS4B overexpression in hepatocellular carcinoma correlates with poor prognosis and increased proliferation
PMID: 25547899
4
VPS4B regulates ESCRT-III dynamics during nuclear envelope stress response
PMID: 39540606
5
VPS4B facilitates lipid droplet transfer through O-GlcNAc modification-dependent mechanisms
PMID: 40410860
6
VPS4B has canonical membrane remodeling roles distinct from VPS4A
PMID: 38687820
7
ESCRT dysfunction including VPS4B has pathophysiological consequences across diseases
PMID: 40562928
Disease Associationsⓘ20
HIV infectionOpen Targets
0.46Moderate
dentin dysplasia type IOpen Targets
0.37Weak
cystic kidney diseaseOpen Targets
0.27Weak
enteritisOpen Targets
0.27Weak
Umbilical herniaOpen Targets
0.16Weak
cancerOpen Targets
0.09Suggestive
colorectal carcinomaOpen Targets
0.07Suggestive
non-small cell lung carcinomaOpen Targets
0.04Suggestive
neoplasmOpen Targets
0.04Suggestive
breast cancerOpen Targets
0.04Suggestive
hepatocellular carcinomaOpen Targets
0.04Suggestive
myeloid sarcomaOpen Targets
0.03Suggestive
Patent ductus arteriosusOpen Targets
0.03Suggestive
cervical carcinomaOpen Targets
0.03Suggestive
lymphoid neoplasmOpen Targets
0.02Suggestive
Abnormal blistering of the skinOpen Targets
0.02Suggestive
ventral herniaOpen Targets
0.02Suggestive
multiple myelomaOpen Targets
0.02Suggestive
glioblastoma multiformeOpen Targets
0.02Suggestive
osteoarthritisOpen Targets
0.02Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
CHMP3Protein interaction100%VPS25Protein interaction97%RNF103-CHMP3Protein interaction97%CHMP4AProtein interaction95%VPS28Protein interaction94%VPS37BProtein interaction94%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
67%
Heart
39%
Liver
37%
Lung
35%
Ovary
26%
Gene Interaction Network
Click a node to explore
VPS4BCHMP3VPS25RNF103-CHMP3CHMP4AVPS28VPS37B
PROTEIN STRUCTURE
Preparing viewer…
PDB4U7Y · 2.50 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.55Moderately Constrained
pLIⓘ
0.82Intermediate
Observed/Expected LoF0.37 [0.26–0.55]
RankingsWhere VPS4B stands among ~20K protein-coding genes
  • #3,579of 20,598
    Most Researched131 · top quartile
  • #3,509of 17,882
    Most Constrained (LOEUF)0.55 · top quartile
Genes detectedVPS4B
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Cytoplasmic YAP1-mediated ESCRT-III assembly promotes autophagic cell death and is ubiquitinated by NEDD4L in breast cancer.
PMID: 37005481
Cancer Commun (Lond) · 2023
1.00
2
Analysis of ESCRT functions in exosome biogenesis, composition and secretion highlights the heterogeneity of extracellular vesicles.
PMID: 24105262
J Cell Sci · 2013
0.90
3
A chemical genetics approach to examine the functions of AAA proteins.
PMID: 33782614
Nat Struct Mol Biol · 2021
0.80
4
VPS4B orchestrates response to nuclear envelope stress by regulating ESCRT-III dynamics in glioblastoma.
PMID: 39540606
Nucleus · 2024
0.70
5
Improved VPS4B O-GlcNAc modification triggers lipid droplets transferring from adipocytes to nasopharyngeal carcinoma cells.
PMID: 40410860
Cancer Metab · 2025
0.60