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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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WDR45
WD repeat domain 45
Chromosome X · Xp11.23
NCBI Gene: 11152Ensembl: ENSG00000196998.20HGNC: HGNC:28912UniProt: Q9Y484
76PubMed Papers
1Diseases
0Drugs
207Pathogenic Variants
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingprotein kinase bindingphosphatidylinositol-3-phosphate bindingphosphatidylinositol phosphate bindingNeurodegeneration with brain iron accumulation 5
✦AI Summary

WDR45 is an X-linked gene encoding a WD repeat β-propeller protein that plays critical roles in autophagy regulation and stress response. As a component of the autophagy machinery, WDR45 binds phosphatidylinositol 3-phosphate (PtdIns3P) and regulates autophagosome assembly downstream of WIPI2, controlling the size of forming autophagosomes 1. WDR45 works in concert with WIPI1 to promote ATG2-mediated lipid transfer by enhancing ATG2 association with PI3P-containing membranes 2. Recent structural studies reveal that WDR45 forms part of the ATG2A-WDR45-ATG9A complex, which serves as core machinery for lipid transfer and equilibration during autophagosome formation 3. Additionally, WDR45 regulates stress granule disassembly through phase separation with Caprin-1, competitively displacing G3BP1 to promote proper stress granule dynamics 4. WDR45 also functions as a tether protein facilitating autophagosome-lysosome fusion in neural cells by interacting with SNARE proteins 5. Mutations in WDR45 cause beta-propeller protein-associated neurodegeneration (BPAN), a rare X-linked disorder characterized by neurodegeneration with brain iron accumulation 6. BPAN-associated mutations impair WDR45's ability to form condensates and interact with regulatory proteins, leading to delayed stress granule disassembly and autophagy defects 4. The gene has also been implicated in intellectual disability and various neurodevelopmental disorders 78.

Sources cited
1
WDR45 binds PtdIns3P and regulates autophagosome assembly downstream of WIPI2
PMID: 28561066
2
WDR45 works with WIPI1 to promote ATG2-mediated lipid transfer
PMID: 31271352
3
WDR45 forms part of ATG2A-WDR45-ATG9A complex for lipid transfer during autophagosome formation
PMID: 40116844
4
WDR45 regulates stress granule disassembly through phase separation with Caprin-1
PMID: 40473629
5
WDR45 functions as a tether protein facilitating autophagosome-lysosome fusion
PMID: 40083067
6
WDR45 mutations cause BPAN, characterized by neurodegeneration with brain iron accumulation
PMID: 29325618
7
WDR45 mutations are associated with intellectual disability
PMID: 25356899
8
WDR45 is implicated in neurodevelopmental disorders
PMID: 36350923
Disease Associationsⓘ1
Neurodegeneration with brain iron accumulation 5UniProt
Pathogenic Variants207
NM_001029896.2(WDR45):c.695G>A (p.Arg232His)Pathogenic
Neurodegeneration with brain iron accumulation 5|See cases|not provided
★★☆☆2026→ Residue 232
NM_001029896.2(WDR45):c.827+1G>APathogenic
not provided|Neurodegeneration with brain iron accumulation 5|Neurodegeneration with brain iron accumulation
★★☆☆2026
NM_001029896.2(WDR45):c.746CCT[1] (p.Ser250del)Pathogenic
not provided|Neurodegeneration with brain iron accumulation 5|Seizure|Inborn genetic diseases
★★☆☆2025→ Residue 250
NM_001029896.2(WDR45):c.659_660del (p.Leu219_Phe220insTer)Pathogenic
not provided|Neurodegeneration with brain iron accumulation 5
★★☆☆2025→ Residue 219
NM_001029896.2(WDR45):c.726-2A>GPathogenic
Neurodegeneration with brain iron accumulation 5|not provided
★★☆☆2025
NM_001029896.2(WDR45):c.183C>A (p.Asn61Lys)Pathogenic
Neurodegeneration with brain iron accumulation 5|not provided|Inborn genetic diseases
★★☆☆2025→ Residue 61
NM_001029896.2(WDR45):c.10C>T (p.Gln4Ter)Pathogenic
Neurodegeneration with brain iron accumulation 5|not provided
★★☆☆2025→ Residue 4
NM_001029896.2(WDR45):c.46C>T (p.Gln16Ter)Pathogenic
not provided|Inborn genetic diseases
★★☆☆2025→ Residue 16
NM_001029896.2(WDR45):c.701G>A (p.Gly234Asp)Likely pathogenic
Neurodegeneration with brain iron accumulation 5
★★☆☆2025→ Residue 234
NM_001029896.2(WDR45):c.697C>T (p.Arg233Ter)Pathogenic
Neurodegeneration with brain iron accumulation 5|not provided|6 conditions|Inborn genetic diseases
★★☆☆2025→ Residue 233
NM_001029896.2(WDR45):c.437-1G>APathogenic
Neurodegeneration with brain iron accumulation 5
★★☆☆2025
NM_001029896.2(WDR45):c.342-2A>GPathogenic
Neurodegeneration with brain iron accumulation 5|Thyroid cancer, nonmedullary, 1
★★☆☆2024
NM_001029896.2(WDR45):c.408dup (p.Glu137Ter)Pathogenic
Neurodegeneration with brain iron accumulation 5|Inborn genetic diseases
★★☆☆2024→ Residue 137
NM_001029896.2(WDR45):c.667_668del (p.Gln223fs)Pathogenic
not provided|Neurodegeneration with brain iron accumulation 5
★★☆☆2024→ Residue 223
NM_001029896.2(WDR45):c.865C>T (p.Gln289Ter)Pathogenic
Neurodegeneration with brain iron accumulation 5|not provided
★★☆☆2024→ Residue 289
NM_001029896.2(WDR45):c.19C>T (p.Arg7Ter)Pathogenic
not provided|Inborn genetic diseases|Neurodegeneration with brain iron accumulation 5|Global developmental delay|Neurodegeneration with brain iron accumulation 5;Oculocutaneous albinism type 7
★★☆☆2024→ Residue 7
NM_001029896.2(WDR45):c.967_968del (p.Val323fs)Pathogenic
Neurodegeneration with brain iron accumulation 5|not provided
★★☆☆2024→ Residue 323
NM_001029896.2(WDR45):c.879_880del (p.Gln294fs)Pathogenic
Inborn genetic diseases|Neurodegeneration with brain iron accumulation 5|not provided
★★☆☆2024→ Residue 294
NM_001029896.2(WDR45):c.397C>T (p.Arg133Ter)Pathogenic
Neurodegeneration with brain iron accumulation 5|not provided|X-linked cerebral-cerebellar-coloboma syndrome syndrome|Inborn genetic diseases
★★☆☆2024→ Residue 133
NM_001029896.2(WDR45):c.516+1_516+3delPathogenic
Neurodegeneration with brain iron accumulation 5|not provided
★★☆☆2024
View on ClinVar ↗
Related Genes
WIPI1Shared pathway100%COASYProtein interaction98%OTUD7BProtein interaction85%C19orf12Protein interaction82%ATG5Protein interaction80%DCAF17Protein interaction75%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
Click a node to explore
WDR45WIPI1COASYOTUD7BC19orf12ATG5DCAF17
PROTEIN STRUCTURE
Preparing viewer…
PDB8KBX · 3.23 Å · EM
View on RCSB ↗
RankingsWhere WDR45 stands among ~20K protein-coding genes
  • #6,303of 20,598
    Most Researched76
  • #320of 5,498
    Most Pathogenic Variants207 · top 10%
Genes detectedWDR45
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
PMID: 33843443
Autophagy · 2021
1.00
2
Neurodegeneration with brain iron accumulation.
PMID: 29325618
Handb Clin Neurol · 2018
0.90
3
ATG2A-WDR45/WIPI4-ATG9A complex-mediated lipid transfer and equilibration during autophagosome formation.
PMID: 40116844
Autophagy · 2025
0.80
4
β-propeller protein-associated neurodegeneration protein WDR45 regulates stress granule disassembly via phase separation with Caprin-1.
PMID: 40473629
Nat Commun · 2025
0.70
5
Integrated gene analyses of de novo variants from 46,612 trios with autism and developmental disorders.
PMID: 36350923
Proc Natl Acad Sci U S A · 2022
0.60