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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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WIPI1
WD repeat domain, phosphoinositide interacting 1
Chromosome 17 · 17q24.2
NCBI Gene: 55062Ensembl: ENSG00000070540.13HGNC: HGNC:25471UniProt: B4DX63
35PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
phagophore assembly siteautophagosome membranecytoplasmtrans-Golgi networktype 2 diabetes mellituscoronary artery diseasemajor depressive disorderMyocardial Ischemia
✦AI Summary

WIPI1 is a core component of the autophagy machinery that regulates intracellular degradation through autophagosome formation and lysosomal delivery 12. WIPI1 functions downstream of ULK1 and PI3-kinase signaling, binding phosphatidylinositol 3-phosphate (PtdIns3P) at phagophore assembly sites on endoplasmic reticulum membranes 3. There, it recruits the ATG12-ATG5-ATG16L1 complex to promote autophagosomal membrane elongation and coordinates lipid transfer via ATG2-mediated mechanisms 34. WIPI1 participates in starvation-induced autophagy, mitophagy, and xenophagy of Staphylococcus aureus 35. Beyond canonical autophagy, WIPI1 regulates melanogenic enzyme transcription and melanosome maturation through TORC1 inhibition, independent of starvation-induced autophagy 6. Dysregulation of WIPI1 contributes to disease pathogenesis: reduced WIPI1 expression associates with type 2 diabetes risk through impaired insulin secretion 78, while WIPI1 downregulation may paradoxically attenuate septic acute lung injury via autophagy activation 9. WIPI1 expression is transcriptionally controlled by the ABL-ERK-MYC signaling axis, linking its autophagy-enhancing function to lifespan regulation 10.

Sources cited
1
WIPI1 is a component of the autophagy machinery controlling intracellular degradation
PMID: 15602573
2
WIPI1 component of autophagy machinery for autosome and lysosomal degradation
PMID: 20114074
3
WIPI1 functions downstream of ULK1 and PI3K, binds PtdIns3P, recruits ATG16L1 complex, and participates in starvation-mediated autophagy and mitophagy
PMID: 28561066
4
WIPI1 assists in recruiting ATG16L1 complex and promotes ATG2-mediated lipid transfer
PMID: 31271352
5
WIPI1 involved in xenophagy of Staphylococcus aureus through autophagosome-like vesicle formation
PMID: 22829830
6
WIPI1 controls melanogenic enzyme transcription and melanosome maturation via TORC1 inhibition, distinct from starvation-induced autophagy
PMID: 21317285
7
WIPI1 identified as hub autophagy-related gene in type 2 diabetes mellitus associated with impaired β-cell function
PMID: 37223013
8
WIPI1 is a candidate gene at proinsulin locus colocalizing with islet expression QTL in type 2 diabetes risk
PMID: 36693378
9
WIPI1 downregulation attenuates septic acute lung injury via autophagy activation
PMID: 40093959
10
WIPI1 expression is controlled by ABL-ERK-MYC signaling axis and enhances autophagy relevant to lifespan control
PMID: 37620393
Disease Associationsⓘ20
type 2 diabetes mellitusOpen Targets
0.44Moderate
coronary artery diseaseOpen Targets
0.34Weak
major depressive disorderOpen Targets
0.30Weak
Myocardial IschemiaOpen Targets
0.29Weak
neural tube defectOpen Targets
0.19Weak
melanomaOpen Targets
0.08Suggestive
acute myeloid leukemiaOpen Targets
0.05Suggestive
COVID-19–associated multisystem inflammatory syndrome in adultsOpen Targets
0.04Suggestive
acute promyelocytic leukemiaOpen Targets
0.04Suggestive
Familial exudative vitreoretinopathyOpen Targets
0.04Suggestive
Familial drusenOpen Targets
0.04Suggestive
enteritisOpen Targets
0.04Suggestive
X-linked retinoschisisOpen Targets
0.03Suggestive
Limb dystoniaOpen Targets
0.03Suggestive
diabetes mellitusOpen Targets
0.03Suggestive
X-linked retinal dysplasiaOpen Targets
0.03Suggestive
nasopharyngeal carcinomaOpen Targets
0.03Suggestive
gliomaOpen Targets
0.03Suggestive
cancerOpen Targets
0.03Suggestive
infectionOpen Targets
0.02Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
WDR45Shared pathway100%BECN1Protein interaction100%ATG101Protein interaction100%PIKFYVEProtein interaction100%VAC14Protein interaction100%ATG4AProtein interaction100%
Tissue Expression6 tissues
Heart
100%
Lung
70%
Liver
27%
Ovary
23%
Bone Marrow
23%
Brain
16%
Gene Interaction Network
Click a node to explore
WIPI1WDR45BECN1ATG101PIKFYVEVAC14ATG4A
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q5MNZ9
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.06LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.82 [0.64–1.06]
RankingsWhere WIPI1 stands among ~20K protein-coding genes
  • #11,093of 20,598
    Most Researched35
  • #10,614of 17,882
    Most Constrained (LOEUF)1.06
Genes detectedWIPI1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
The ubiquitin kinase PINK1 recruits autophagy receptors to induce mitophagy.
PMID: 26266977
Nature · 2015
1.00
2
Identification and analysis of type 2 diabetes-mellitus-associated autophagy-related genes.
PMID: 37223013
Front Endocrinol (Lausanne) · 2023
0.90
3
From Gene to Intervention: NLRC4 and WIPI1 Regulate Septic Acute Lung Injury Through Autophagy.
PMID: 40093959
J Inflamm Res · 2025
0.80
4
Impaired autophagy and APP processing in Alzheimer's disease: The potential role of Beclin 1 interactome.
PMID: 23827971
Prog Neurobiol · 2013
0.70
5
WIPI1 coordinates melanogenic gene transcription and melanosome formation via TORC1 inhibition.
PMID: 21317285
J Biol Chem · 2011
0.60