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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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YIPF3
Yip1 domain family member 3
Chromosome 6 · 6p21.1
NCBI Gene: 25844Ensembl: ENSG00000137207.13HGNC: HGNC:21023UniProt: Q5JTD5
46PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingGolgi apparatustransport vesiclecytoplasmneurodegenerative diseaseplacenta praeviaacute kidney injuryIGA glomerulonephritis
✦AI Summary

YIPF3 (Yip1 domain family member 3) is a five-pass transmembrane protein that primarily localizes to the cis-Golgi apparatus and plays crucial roles in Golgi maintenance and selective autophagy 12. The protein functions as part of a heterodimeric complex with YIPF4, which serves as a novel Golgiphagy receptor that facilitates the selective degradation of Golgi compartments through autophagy 34. YIPF3 contains an LC3-interacting region (LIR) motif that enables direct binding to mammalian Atg8-family proteins (LC3B, GABARAP, and GABARAPL1), with this interaction regulated by phosphorylation sites upstream of the LIR motif 3. The protein undergoes complex post-translational modifications, being N-glycosylated in the ER, then O-glycosylated in the Golgi, and finally cleaved at its C-terminal luminal domain 2. YIPF3 is essential for maintaining normal Golgi morphology, as its depletion causes Golgi fragmentation and elongated morphology 23. Beyond its structural role, YIPF3 has been identified as a hematopoietic marker expressed from embryonic stem cells to mature blood cell lineages, particularly NK cells 5. Clinically, YIPF3 has emerged as a potential biomarker in acute myocardial infarction and shows associations with anti-VEGF treatment response in neovascular age-related macular degeneration 67.

Sources cited
1
YIPF3 and YIPF4 form a Golgiphagy receptor complex with LIR motif-dependent interaction with LC3B and related proteins
PMID: 38822137
2
YIPF3-YIPF4 heterodimer identified as first mammalian Golgiphagy receptor with regulatory phosphorylation
PMID: 38456639
3
YIPF3 is a five-pass transmembrane protein that localizes to cis-Golgi and maintains Golgi morphology
PMID: 27999994
4
YIPF3 localizes to cis-Golgi, undergoes post-translational modifications, forms complex with YIPF4, and is essential for Golgi structure
PMID: 21757827
5
YIPF3 (KLIP-1) is a hematopoietic marker expressed from embryonic stem cells to mature blood lineages, particularly NK cells
PMID: 12490290
6
YIPF3 identified as part of 11-gene signature for acute myocardial infarction diagnosis
PMID: 36182975
7
YIPF3 downregulation associated with poor anti-VEGF treatment response in neovascular age-related macular degeneration
PMID: 39140961
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.36Weak
placenta praeviaOpen Targets
0.03Suggestive
acute kidney injuryOpen Targets
0.02Suggestive
IGA glomerulonephritisOpen Targets
0.01Suggestive
diabetes mellitusOpen Targets
0.00Suggestive
COVID-19–associated multisystem inflammatory syndrome in adultsOpen Targets
0.00Suggestive
Endometrial Serous AdenocarcinomaOpen Targets
0.00Suggestive
hepatocellular carcinomaOpen Targets
0.00Suggestive
cervical cancerOpen Targets
0.00Suggestive
esophageal cancerOpen Targets
0.00Suggestive
gastric cancerOpen Targets
0.00Suggestive
head and neck squamous cell carcinomaOpen Targets
0.00Suggestive
Hereditary breast cancerOpen Targets
0.00Suggestive
hereditary breast carcinomaOpen Targets
0.00Suggestive
melanomaOpen Targets
0.00Suggestive
ovarian serous cystadenocarcinomaOpen Targets
0.00Suggestive
thyroid cancer, nonmedullary, 1Open Targets
0.00Suggestive
urinary bladder cancerOpen Targets
0.00Suggestive
urinary bladder carcinomaOpen Targets
0.00Suggestive
uterine corpus endometrial carcinomaOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
YIF1AProtein interaction97%YIPF6Protein interaction90%YIPF5Protein interaction75%SCELProtein interaction71%YIPF1Protein interaction71%YIPF4Protein interaction65%
Tissue Expression6 tissues
Liver
100%
Lung
86%
Ovary
79%
Brain
78%
Heart
73%
Bone Marrow
47%
Gene Interaction Network
Click a node to explore
YIPF3YIF1AYIPF6YIPF5SCELYIPF1YIPF4
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q5JTD5
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.63LoF Tolerant
pLIⓘ
0.18Tolerant
Observed/Expected LoF0.42 [0.29–0.63]
RankingsWhere YIPF3 stands among ~20K protein-coding genes
  • #9,401of 20,598
    Most Researched46
  • #4,411of 17,882
    Most Constrained (LOEUF)0.63 · top quartile
Genes detectedYIPF3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
YIPF3 and YIPF4 regulate autophagic turnover of the Golgi apparatus.
PMID: 38822137
EMBO J · 2024
1.00
2
Molecular Responses of Anti-VEGF Therapy in Neovascular Age-Related Macular Degeneration: Integrative Insights From Multi-Omics and Clinical Imaging.
PMID: 39140961
Invest Ophthalmol Vis Sci · 2024
0.90
3
Identification of the YIPF3-YIPF4 heterodimer as a novel Golgiphagy receptor.
PMID: 38456639
Autophagy · 2024
0.80
4
Identification of an 11 immune-related gene signature as the novel biomarker for acute myocardial infarction diagnosis.
PMID: 36182975
Genes Immun · 2022
0.70
5
Functional characterisation of the YIPF protein family in mammalian cells.
PMID: 27999994
Histochem Cell Biol · 2017
0.60