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GeneE
8 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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YIPF4
Yip1 domain family member 4
Chromosome 2 · 2p22.3
NCBI Gene: 84272Ensembl: ENSG00000119820.12HGNC: HGNC:28145UniProt: Q9BSR8
36PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingendoplasmic reticulumGolgi apparatustrans-Golgi networkneurodegenerative diseasevestibular diseaseseborrheic keratosisgout
✦AI Summary

YIPF4 is a five-pass transmembrane Golgi-resident protein that plays dual roles in organelle structure maintenance and selective autophagy. Primarily, YIPF4 localizes to the cis-Golgi apparatus where it forms a heterodimeric complex with YIPF3, essential for maintaining Golgi morphology 1. Knockdown of YIPF4 induces Golgi fragmentation, demonstrating its critical role in organellar integrity 12. Mechanistically, YIPF4 functions as a core component of the first mammalian Golgiphagy receptor 34. The YIPF3-YIPF4 heterodimer directly interacts with LC3B, GABARAP, and GABARAPL1 (mammalian Atg8-family proteins) through a LIR motif in YIPF3, facilitating selective autophagosomal degradation of the Golgi apparatus 34. YIPF4 specifically governs complex stability, and this interaction is phosphorylation-regulated 4. Clinically, YIPF4 emerges as a disease-relevant biomarker. It serves as a stage-specific transcriptional marker in inflammatory bowel disease (IBD) remission and correlates with improved patient outcomes 5. YIPF4 is identified as a fibrosis-related prognostic gene in hepatocellular carcinoma, promoting HCC cell proliferation and migration 6. Additionally, YIPF4 is incorporated into a six-mRNA prognostic signature for head and neck squamous cell carcinoma survival prediction 7, suggesting broader oncologic relevance.

Sources cited
1
YIPF3 and YIPF4 constitute a Golgiphagy receptor that interacts with LC3B and GABARAP through a LIR motif, regulating selective Golgi autophagy; YIPF4 governs complex stability
PMID: 38822137
2
YIPF3-YIPF4 heterodimer identified as first mammalian Golgiphagy receptor; directly binds ATG8-family proteins with phosphorylation-regulated interaction; cells lacking YIPF4 show Golgiphagy defects
PMID: 38456639
3
YIPF4 localizes to cis-Golgi, forms complex with YIPF3, and knockdown induces Golgi fragmentation, indicating role in Golgi structure maintenance
PMID: 21757827
4
YIPF4 is cis-Golgi-localizing protein with five transmembrane domains; depleted YIPF4 causes specific morphological changes to Golgi
PMID: 27999994
5
YIPF4 identified as stage-specific transcriptional marker in IBD remission; associated with improved disease staging accuracy via multi-omics analysis
PMID: 41074150
6
YIPF4 is fibrosis-related prognostic gene in HCC; promotes proliferation and migration of hepatocellular carcinoma cells
PMID: 41613122
7
YIPF4 incorporated into six-mRNA prognostic signature for head and neck squamous cell carcinoma with high sensitivity and specificity for survival prediction
PMID: 29212247
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.37Weak
vestibular diseaseOpen Targets
0.27Weak
seborrheic keratosisOpen Targets
0.24Weak
goutOpen Targets
0.16Weak
alopeciaOpen Targets
0.06Suggestive
diaphragmatic herniaOpen Targets
0.04Suggestive
attention deficit hyperactivity disorderOpen Targets
0.04Suggestive
IrritabilityOpen Targets
0.03Suggestive
musculoskeletal system diseaseOpen Targets
0.03Suggestive
Abnormality of refractionOpen Targets
0.03Suggestive
substance abuseOpen Targets
0.03Suggestive
risk-taking behaviourOpen Targets
0.02Suggestive
neoplasmOpen Targets
0.01Suggestive
cardiovascular diseaseOpen Targets
0.00Suggestive
cervical cancerOpen Targets
0.00Suggestive
glycogen storage disease VIOpen Targets
0.00Suggestive
lymph node metastatic carcinomaOpen Targets
0.00Suggestive
Posterior Leukoencephalopathy SyndromeOpen Targets
0.00Suggestive
tuberculosisOpen Targets
0.00Suggestive
hepatocellular carcinomaOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
YIPF7Shared pathway100%YIPF2Protein interaction79%YIF1AProtein interaction71%YIPF1Protein interaction71%BET1Shared pathway67%YIPF3Protein interaction65%
Tissue Expression6 tissues
Brain
100%
Heart
82%
Liver
61%
Ovary
49%
Lung
43%
Bone Marrow
15%
Gene Interaction Network
Click a node to explore
YIPF4YIPF7YIPF2YIF1AYIPF1BET1YIPF3
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q9BSR8
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.37LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.86 [0.56–1.37]
RankingsWhere YIPF4 stands among ~20K protein-coding genes
  • #10,895of 20,598
    Most Researched36
  • #14,326of 17,882
    Most Constrained (LOEUF)1.37
Genes detectedYIPF4
Sources retrieved8 papers
Response time—
📄 Sources
8▼
1
YIPF3 and YIPF4 regulate autophagic turnover of the Golgi apparatus.
PMID: 38822137
EMBO J · 2024
1.00
2
Identification of the YIPF3-YIPF4 heterodimer as a novel Golgiphagy receptor.
PMID: 38456639
Autophagy · 2024
0.88
3
Decoding IBD progression: a dynamic biomarker atlas for personalized disease stratification.
PMID: 41074150
J Transl Med · 2025
0.75
4
Integrating single-cell RNA sequencing with spatial transcriptomics reveal the fibrosis-related genes in hepatocellular carcinoma.
PMID: 41613122
Front Immunol · 2025
0.63
5
Characterization of YIPF3 and YIPF4, cis-Golgi Localizing Yip domain family proteins.
PMID: 21757827
Cell Struct Funct · 2011
0.50