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25 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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YTHDC1
YTH N6-methyladenosine RNA binding protein C1
Chromosome 4 · 4q13.2
NCBI Gene: 91746Ensembl: ENSG00000083896.13HGNC: HGNC:30626UniProt: J3QR07
156PubMed Papers
0Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Highly Constrained
RESEARCH IMPACT
Trending
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
RNA bindingprotein bindingN6-methyladenosine-containing RNA reader activitymRNA splice site recognition
✦AI Summary

YTHDC1 is a nuclear m6A reader protein that plays crucial roles in RNA metabolism and cellular homeostasis. Its primary function involves recognizing and binding N6-methyladenosine (m6A)-modified RNAs to regulate alternative splicing 1. YTHDC1 promotes exon inclusion by recruiting splicing factor SRSF3 while blocking SRSF10 binding, with transcriptome analysis revealing that YTHDC1-regulated splicing patterns mirror SRSF3 but oppose SRSF10 1. The protein undergoes liquid-liquid phase separation in an m6A-dependent manner, forming nuclear YTHDC1-m6A condensates (nYACs) that protect m6A-modified mRNAs from degradation by the PAXT complex and exosome 2. In cancer contexts, YTHDC1 functions as a tumor suppressor by modulating ferroptosis resistance through regulation of FSP1 mRNA stability via alternative polyadenylation 3. YTHDC1 also maintains autophagy by stabilizing SQSTM1 mRNA in cooperation with ELAVL1/HuR 4. Recent studies reveal that YTHDC1 can be post-translationally modified by lactylation at K82, which enhances its phase separation and promotes stability of oncogenic transcripts like BCL2 and E2F2 5. The increased number of nYACs in acute myeloid leukemia cells compared to normal hematopoietic cells suggests YTHDC1's importance in maintaining leukemic cell survival and undifferentiated states 2.

Sources cited
1
YTHDC1 regulates alternative splicing by recruiting SRSF3 and blocking SRSF10, with splicing patterns opposing SRSF10
PMID: 26876937
2
YTHDC1 undergoes m6A-dependent phase separation forming nuclear condensates that protect mRNAs from degradation
PMID: 34048709
3
YTHDC1 functions as tumor suppressor by modulating FSP1-dependent ferroptosis through alternative polyadenylation
PMID: 37903990
4
YTHDC1 maintains autophagy by stabilizing SQSTM1 mRNA in cooperation with ELAVL1/HuR
PMID: 34657574
5
YTHDC1 lactylation at K82 enhances phase separation and promotes stability of oncogenic transcripts BCL2 and E2F2
PMID: 40680722
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
TRA2BProtein interaction100%SRSF2Protein interaction98%KDM3BProtein interaction96%PRRC2AProtein interaction95%IGF2BP3Protein interaction95%IGF2BP2Protein interaction95%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
Click a node to explore
YTHDC1TRA2BSRSF2KDM3BPRRC2AIGF2BP3IGF2BP2
PROTEIN STRUCTURE
Preparing viewer…
PDB6T02 · 1.10 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.18Highly Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.11 [0.07–0.18]
RankingsWhere YTHDC1 stands among ~20K protein-coding genes
  • #2,900of 20,598
    Most Researched156 · top quartile
  • #363of 17,882
    Most Constrained (LOEUF)0.18 · top 5%
Genes detectedYTHDC1
Sources retrieved25 papers
Response time—
📄 Sources
25▼
1
Histone lactylation-regulated METTL3 promotes ferroptosis via m6A-modification on ACSL4 in sepsis-associated lung injury.
PMID: 38852200
Redox Biol · 2024
1.00
2
The role of m6A modification in the biological functions and diseases.
PMID: 33611339
Signal Transduct Target Ther · 2021
0.90
3
Nuclear m(6)A Reader YTHDC1 Regulates mRNA Splicing.
PMID: 26876937
Mol Cell · 2016
0.80
4
YTHDC1 lactylation regulates its phase separation to enhance target mRNA stability and promote RCC progression.
PMID: 40680722
Mol Cell · 2025
0.70
5
The m6A reader PRRC2A is essential for meiosis I completion during spermatogenesis.
PMID: 36964127
Nat Commun · 2023
0.68