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GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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ZBED6
zinc finger BED-type containing 6
Chromosome 1 · 1q32.1
NCBI Gene: 100381270Ensembl: ENSG00000257315.4HGNC: HGNC:33273UniProt: P86452
20PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
cytoplasmnucleoplasmnucleusnegative regulation of transcription by RNA polymerase IIneurodegenerative diseaseandrogenetic alopeciabreast carcinomaankylosing spondylitis
✦AI Summary

ZBED6 is a zinc finger transcription factor and domesticated DNA transposon-derived protein that functions as a context-dependent regulator of cell growth and metabolism 1. As a transcriptional repressor, ZBED6 binds the consensus sequence 5'-GCTCGC-3' and regulates multiple target genes including IGF2, CDH2, and PRC 12. In skeletal muscle, ZBED6 suppresses IGF2 expression, thereby negatively regulating postnatal growth and myoblast differentiation 1. Conversely, in pancreatic beta cells, ZBED6 promotes proliferation and survival while suppressing specialized insulin production, with nuclear ZBED6 forms enriched in rapidly proliferating cells 3. ZBED6 regulates beta cell adhesion by repressing N-cadherin (CDH2) transcription, affecting cell-to-cell junctions 4. Clinically, ZBED6 dysfunction associates with disease: loss of ZBED6 protects against sepsis-induced muscle atrophy through DOCK3 upregulation and RAC1/PI3K/AKT pathway activation 5, while reduced ZBED6 expression in glioblastoma promotes migration via dysregulated Wnt/β-catenin signaling and poor patient prognosis 6. ZBED6 expression effects on colorectal cancer growth are context-dependent, reflecting its tissue and genetic background-specific functions 7.

Sources cited
1
ZBED6 is a domesticated DNA transposon-derived transcription factor that represses IGF2 and regulates muscle growth through binding to consensus sequence 5'-GCTCGC-3'
PMID: 20016685
2
ZBED6 promotes pancreatic beta cell proliferation and survival, with nuclear forms predominant in rapidly proliferating cells but reduced in human islets
PMID: 24043816
3
ZBED6 limits excessive beta cell mitochondrial activation by restricting PRC-mediated mitochondrial function and protects against high-fat diet-induced glucose intolerance
PMID: 34296320
4
ZBED6 represses N-cadherin transcription and regulates beta cell adhesion and cell-to-cell junction formation with neural crest stem cells
PMID: 26750727
5
Loss of ZBED6 protects against sepsis-induced muscle atrophy by upregulating DOCK3 and activating RAC1/PI3K/AKT signaling; increased ZBED6 is found in sepsis patients
PMID: 37551034
6
Reduced ZBED6 expression in glioblastoma promotes migration by dysregulating Wnt/β-catenin signaling through TCF7L2, and low ZBED6 associates with poor patient prognosis
PMID: 40306163
7
ZBED6 knockout affects cell cycle regulation in colorectal cancer cells with context-dependent effects on growth rate depending on genetic background
PMID: 26056301
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.43Moderate
androgenetic alopeciaOpen Targets
0.39Weak
breast carcinomaOpen Targets
0.38Weak
ankylosing spondylitisOpen Targets
0.32Weak
ovarian dysfunctionOpen Targets
0.28Weak
luminal A breast carcinomaOpen Targets
0.26Weak
Romano-Ward syndromeOpen Targets
0.08Suggestive
SepsisOpen Targets
0.08Suggestive
Familial progressive cardiac conduction defectOpen Targets
0.08Suggestive
glioblastoma multiformeOpen Targets
0.08Suggestive
familial atrial fibrillationOpen Targets
0.07Suggestive
Familial short QT syndromeOpen Targets
0.07Suggestive
catecholaminergic polymorphic ventricular tachycardiaOpen Targets
0.07Suggestive
Brugada syndromeOpen Targets
0.07Suggestive
Arrhythmogenic right ventricular dysplasiaOpen Targets
0.07Suggestive
hypertrophic cardiomyopathyOpen Targets
0.07Suggestive
Rare familial disorder with hypertrophic cardiomyopathyOpen Targets
0.07Suggestive
atrial fibrillationOpen Targets
0.06Suggestive
sudden cardiac arrestOpen Targets
0.06Suggestive
Idiopathic ventricular fibrillation, not Brugada typeOpen Targets
0.06Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
ZC3H11AProtein interaction98%IGF2Protein interaction84%TCF23Shared pathway20%KCNK16Shared pathway13%STXBP4Shared pathway11%CDK16Shared pathway11%
Tissue Expression6 tissues
Ovary
100%
Lung
88%
Liver
64%
Brain
58%
Heart
16%
Bone Marrow
7%
Gene Interaction Network
Click a node to explore
ZBED6ZC3H11AIGF2TCF23KCNK16STXBP4CDK16
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt P86452
View on AlphaFold ↗
RankingsWhere ZBED6 stands among ~20K protein-coding genes
  • #14,322of 20,598
    Most Researched20
Genes detectedZBED6
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Transcription factor ZBED6 affects gene expression, proliferation, and cell death in pancreatic beta cells.
PMID: 24043816
Proc Natl Acad Sci U S A · 2013
1.00
2
Transcriptional modulator ZBED6 affects cell cycle and growth of human colorectal cancer cells.
PMID: 26056301
Proc Natl Acad Sci U S A · 2015
0.90
3
Loss of ZBED6 Protects Against Sepsis-Induced Muscle Atrophy by Upregulating DOCK3-Mediated RAC1/PI3K/AKT Signaling Pathway in Pigs.
PMID: 37551034
Adv Sci (Weinh) · 2023
0.80
4
ZBED6 inhibits the migration of glioblastoma cells by regulating the Wnt/β-catenin signaling pathway.
PMID: 40306163
Biochem Biophys Res Commun · 2025
0.70
5
KHDRBS1 regulates the pentose phosphate pathway and malignancy of GBM through SNORD51-mediated polyadenylation of ZBED6 pre-mRNA.
PMID: 39516455
Cell Death Dis · 2024
0.60