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GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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ZC3H11A
zinc finger CCCH-type containing 11A
Chromosome 1 · 1q32.1
NCBI Gene: 9877Ensembl: ENSG00000058673.17HGNC: HGNC:29093UniProt: O75152
123PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedTransporter
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
poly(A)+ mRNA export from nucleusRNA bindingprotein bindingtranscription export complexandrogenetic alopeciaankylosing spondylitisneurodegenerative diseaseovarian dysfunction
✦AI Summary

ZC3H11A is a stress-induced, CCCH-type zinc finger protein of 810 amino acids with an N-terminal structured zinc finger domain and intrinsically disordered remainder 1. Its primary function involves nuclear mRNA export, where it associates with the transcription export (TREX) complex and localizes to nuclear splicing speckles 2. ZC3H11A binds short purine-rich ribonucleotide stretches in RNA through its zinc finger motifs and interacts with the nuclear poly(A)-binding protein PABPN1, which controls its nuclear speckle localization 3. Mechanistically, ZC3H11A is essential for nuclear-replicating viruses including HIV-1, influenza virus, herpes simplex virus, and adenovirus, facilitating efficient viral mRNA export during infection 2. It regulates viral transcript polyadenylation in a PABPN1-dependent manner 3, and is similarly required for pseudorabies virus and porcine circovirus 2 proliferation 4. Disease relevance includes high myopia, where ZC3H11A mutations cause retinal dysfunction through dysregulation of PI3K-AKT and NF-κB signaling pathways, with upregulation of inflammatory and myopic factors 5. Additionally, ZC3H11A functions as a competitive endogenous RNA in melanoma, sequestering tumor suppressor microRNAs to promote metastasis when amplified via chromosome 1 gains 6. These findings identify ZC3H11A as a potential therapeutic target for viral infections, myopia, and cancer progression.

Sources cited
1
ZC3H11A is a stress-induced nuclear protein required for efficient growth of nuclear-replicating viruses (HIV, influenza, HSV, adenovirus) through mRNA export; binds purine-rich RNA sequences
PMID: 29610341
2
ZC3H11A interacts with PABPN1 to regulate viral and cellular mRNA polyadenylation; uses zinc finger motifs for both PABPN1 and viral mRNA interaction
PMID: 37356722
3
ZC3H11A mutations cause high myopia through dysregulation of PI3K-AKT and NF-κB pathways, upregulating inflammatory factors and causing retinal dysfunction
PMID: 40864167
4
ZC3H11A functions as competitive endogenous RNA in melanoma, sequestering tumor suppressor miRNAs to promote metastasis when amplified via chromosome 1q gains
PMID: 36052492
5
Porcine ZC3H11A is essential for mRNA export and required for proliferation of pseudorabies virus and porcine circovirus 2
PMID: 35559610
6
ZC3H11A is 810 amino acids with structured N-terminal zinc finger domain (1-86 aa) and intrinsically disordered remainder; RNA-binding capacity essential for function
PMID: 38969281
Disease Associationsⓘ20
androgenetic alopeciaOpen Targets
0.42Moderate
ankylosing spondylitisOpen Targets
0.31Weak
neurodegenerative diseaseOpen Targets
0.21Weak
ovarian dysfunctionOpen Targets
0.15Weak
breast carcinomaOpen Targets
0.13Weak
luminal A breast carcinomaOpen Targets
0.11Weak
Griscelli diseaseOpen Targets
0.09Suggestive
Griscelli disease type 3Open Targets
0.08Suggestive
Griscelli syndrome type 3Open Targets
0.08Suggestive
ringed hair diseaseOpen Targets
0.08Suggestive
uncombable hair syndromeOpen Targets
0.07Suggestive
Microcephaly - albinism - digital anomaliesOpen Targets
0.06Suggestive
microcephaly-albinism-digital anomalies syndromeOpen Targets
0.06Suggestive
pili bifurcatiOpen Targets
0.06Suggestive
oculocutaneous albinism type 3Open Targets
0.06Suggestive
Griscelli disease type 1Open Targets
0.06Suggestive
Griscelli syndrome type 1Open Targets
0.06Suggestive
Hemoglobin E - beta-thalassemiaOpen Targets
0.05Suggestive
hemoglobin E-beta-thalassemia syndromeOpen Targets
0.05Suggestive
Tietz syndromeOpen Targets
0.05Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
NXF3Shared pathway100%DDX19BShared pathway100%DDX39BProtein interaction100%SARNPProtein interaction99%ZBED6Protein interaction98%NCBP2Protein interaction96%
Tissue Expression6 tissues
Liver
100%
Lung
86%
Ovary
78%
Brain
38%
Bone Marrow
1%
Heart
0%
Gene Interaction Network
Click a node to explore
ZC3H11ANXF3DDX19BDDX39BSARNPZBED6NCBP2
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt O75152
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.29Highly Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.19 [0.13–0.29]
RankingsWhere ZC3H11A stands among ~20K protein-coding genes
  • #3,843of 20,598
    Most Researched123 · top quartile
  • #1,037of 17,882
    Most Constrained (LOEUF)0.29 · top 10%
Genes detectedZC3H11A
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
PMID: 40864167
Elife · 2025
1.00
2
Gain of Chromosome 1q Perturbs a Competitive Endogenous RNA Network to Promote Melanoma Metastasis.
PMID: 36052492
Cancer Res · 2022
0.90
3
The RNA-binding protein ZC3H11A interacts with the nuclear poly(A)-binding protein PABPN1 and alters polyadenylation of viral transcripts.
PMID: 37356722
J Biol Chem · 2023
0.80
4
Porcine ZC3H11A Is Essential for the Proliferation of Pseudorabies Virus and Porcine Circovirus 2.
PMID: 35559610
ACS Infect Dis · 2022
0.70
5
Multiple nuclear-replicating viruses require the stress-induced protein ZC3H11A for efficient growth.
PMID: 29610341
Proc Natl Acad Sci U S A · 2018
0.60