HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
ZBTB33
zinc finger and BTB domain containing 33
Chromosome X · Xq24
NCBI Gene: 10009Ensembl: ENSG00000177485.8HGNC: HGNC:16682UniProt: Q86T24
139PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
methyl-CpG bindingsequence-specific DNA bindingplasma membranenegative regulation of DNA-templated transcriptionneurodegenerative diseasetriple-negative breast cancerneoplasmbreast cancer
✦AI Summary

ZBTB33 (Kaiso) is a dual-specificity transcriptional regulator that binds both methylated CpG dinucleotides (5'-CGCG-3') and unmethylated consensus sequences (5'-CTGCNA-3') 1. As a primary function, ZBTB33 recruits the N-CoR repressor complex to promote histone deacetylation and repressive chrX formation, notably repressing Wnt pathway target genes and MMP7 expression [UniProt]. The protein mediates cell-cycle regulation through the cyclin D1/E1/RB1/E2F pathway, with cell-type-dependent effects on proliferation 2. ZBTB33 also regulates DNA methylation homeostasis by interacting with de novo methyltransferases DNMT3a/3b and protecting genic and enhancer regions from demethylation 3. Clinically, ZBTB33 mutations have emerged as novel drivers of clonal hematopoiesis (CH), with positive selection in aging blood cells 45. These mutations correlate with increased infection risk, mortality, and hematological malignancy susceptibility 4. In cancer, ZBTB33 overexpression associates with poor prognosis and metastatic potential 2. Additionally, ZBTB33 subcellular partitioning functionally links autophagy markers and immune microenvironment features to breast cancer survival 6, and participates in the ZNF131/ZBTB33/SMC4 oncogenic axis in hepatocellular carcinoma 7.

Sources cited
1
ZBTB33 mutations are under positive selection in clonal hematopoiesis and correlate with heightened infection, death, and hematological malignancy risk
PMID: 38744975
2
ZBTB33 mutations are common in clonal hematopoiesis and MDS; Zbtb33-edited cells show competitive advantage and increased intron retention
PMID: 34568833
3
ZBTB33 mediates cell-cycle regulation through cyclin D1/E1/RB1/E2F pathway with cell-type-dependent effects
PMID: 27694442
4
ZBTB33 binds unmethylated CpG sites as demonstrated by bisulfite sequencing analysis
PMID: 39385066
5
ZBTB33 subcellular distribution associates with autophagy markers and breast cancer survival outcomes
PMID: 33526872
6
ZBTB33 participates in ZNF131/ZBTB33/SMC4 axis driving hepatocellular carcinoma proliferation
PMID: 38241815
7
ZBTB33 deficiency leads to whole-genome hypermethylation and interacts with de novo methyltransferases DNMT3a/3b
PMID: 34299205
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.54Moderate
triple-negative breast cancerOpen Targets
0.10Suggestive
neoplasmOpen Targets
0.09Suggestive
breast cancerOpen Targets
0.07Suggestive
chronic myelogenous leukemiaOpen Targets
0.07Suggestive
gliomaOpen Targets
0.06Suggestive
lung cancerOpen Targets
0.05Suggestive
cancerOpen Targets
0.05Suggestive
Bartsocas-Papas syndrome 1Open Targets
0.04Suggestive
acute lymphoblastic leukemiaOpen Targets
0.03Suggestive
non-small cell lung carcinomaOpen Targets
0.03Suggestive
Miyoshi myopathyOpen Targets
0.03Suggestive
posterior cortical atrophyOpen Targets
0.02Suggestive
colitisOpen Targets
0.02Suggestive
hepatocellular carcinomaOpen Targets
0.02Suggestive
colorectal carcinomaOpen Targets
0.02Suggestive
ThymomaOpen Targets
0.02Suggestive
colon carcinomaOpen Targets
0.02Suggestive
cervical cancerOpen Targets
0.02Suggestive
cerebral creatine deficiency syndromeOpen Targets
0.01Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
CTNND1Protein interaction100%NCOR2Protein interaction100%NCOR1Protein interaction95%CTCFProtein interaction90%CTNND2Protein interaction81%RAPSNProtein interaction81%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
66%
Liver
32%
Heart
25%
Lung
20%
Ovary
20%
Gene Interaction Network
Click a node to explore
ZBTB33CTNND1NCOR2NCOR1CTCFCTNND2RAPSN
PROTEIN STRUCTURE
Preparing viewer…
PDB6DFB · 1.66 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.70LoF Tolerant
pLIⓘ
0.23Tolerant
Observed/Expected LoF0.42 [0.27–0.70]
RankingsWhere ZBTB33 stands among ~20K protein-coding genes
  • #3,327of 20,598
    Most Researched139 · top quartile
  • #5,353of 17,882
    Most Constrained (LOEUF)0.70
Genes detectedZBTB33
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Analysis of somatic mutations in whole blood from 200,618 individuals identifies pervasive positive selection and novel drivers of clonal hematopoiesis.
PMID: 38744975
Nat Genet · 2024
1.00
2
PMID: 34568833
Blood Cancer Discov · 2021
0.90
3
Cell-specific Kaiso (ZBTB33) Regulation of Cell Cycle through Cyclin D1 and Cyclin E1.
PMID: 27694442
J Biol Chem · 2016
0.80
4
MethylSeqLogo: DNA methylation smart sequence logos.
PMID: 39385066
BMC Bioinformatics · 2024
0.70
5
Kaiso (ZBTB33) subcellular partitioning functionally links LC3A/B, the tumor microenvironment, and breast cancer survival.
PMID: 33526872
Commun Biol · 2021
0.60