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GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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ZCCHC4
zinc finger CCHC-type containing 4
Chromosome 4 · 4p15.2
NCBI Gene: 29063Ensembl: ENSG00000168228.17HGNC: HGNC:22917UniProt: Q9H5U6
24PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
nucleoluscytoplasmzinc ion bindingrRNA (adenine-N6-)-methyltransferase activityAbnormality of the skeletal systemmultisite chronic painplacenta praeviaNon-Neoplastic Bile Duct Disorder
✦AI Summary

ZCCHC4 is an N6-methyladenosine (m6A) rRNA methyltransferase that catalyzes methylation of adenine at position 4220 of 28S rRNA 12. This m6A modification of 28S rRNA is essential for efficient global translation 13. Structurally, ZCCHC4 contains a methyltransferase domain integrated with GRF-type and C2H2 zinc finger domains plus a CCHC domain, creating a unified RNA-binding surface with an autoinhibitory conformation that regulates substrate specificity 4. Beyond its canonical rRNA methyltransferase function, ZCCHC4 functions as an RNA-binding protein with oncogenic roles. ZCCHC4 is aberrantly overexpressed in multiple human cancers including hepatocellular carcinoma, pancreatic cancer, colon cancer, lung cancer, and esophageal cancer 56. Its overexpression is associated with poor prognosis and chemoresistance to DNA-damaging agents 5. Mechanistically, ZCCHC4 promotes chemoresistance by inhibiting DNA-damage-induced apoptosis through interactions with long noncoding RNAs, blocking apoptotic signaling pathways 57. In esophageal cancer, ZCCHC4 knockdown increases reactive oxygen species levels, triggering S-phase arrest and enhancing cisplatin sensitivity 6. These findings identify ZCCHC4 as a potential therapeutic target for improving chemotherapy efficacy.

Sources cited
1
Structurally, ZCCHC4 contains a methyltransferase domain integrated with GRF-type and C2H2 zinc finger domains plus a CCHC domain, creating a unified RNA-binding surface with an autoinhibitory conformation that regulates substrate specificity .
PMID: 31695039
2
ZCCHC4 is aberrantly overexpressed in multiple human cancers including hepatocellular carcinoma, pancreatic cancer, colon cancer, lung cancer, and esophageal cancer , .
PMID: 35853866
3
ZCCHC4 is aberrantly overexpressed in multiple human cancers including hepatocellular carcinoma, pancreatic cancer, colon cancer, lung cancer, and esophageal cancer , .
PMID: 39934309
⚠Limited data available — This gene has 3 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ20
Abnormality of the skeletal systemOpen Targets
0.35Weak
multisite chronic painOpen Targets
0.31Weak
placenta praeviaOpen Targets
0.30Weak
Non-Neoplastic Bile Duct DisorderOpen Targets
0.30Weak
HeadacheOpen Targets
0.29Weak
obesityOpen Targets
0.15Weak
neoplasmOpen Targets
0.09Suggestive
insomniaOpen Targets
0.09Suggestive
hepatocellular carcinomaOpen Targets
0.08Suggestive
esophageal cancerOpen Targets
0.07Suggestive
colorectal carcinomaOpen Targets
0.07Suggestive
cancerOpen Targets
0.07Suggestive
congestive heart failureOpen Targets
0.06Suggestive
esophageal squamous cell carcinomaOpen Targets
0.05Suggestive
morbid obesityOpen Targets
0.05Suggestive
COVID-19Open Targets
0.04Suggestive
severe acute respiratory syndromeOpen Targets
0.03Suggestive
tooth diseaseOpen Targets
0.02Suggestive
ovarian neoplasmOpen Targets
0.02Suggestive
ovarian dysfunctionOpen Targets
0.02Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
RBM15Protein interaction100%METTL3Protein interaction100%METTL14Protein interaction100%METTL16Protein interaction100%LSM12Protein interaction95%WTAPProtein interaction95%
Tissue Expression6 tissues
Heart
100%
Ovary
84%
Bone Marrow
65%
Lung
64%
Liver
58%
Brain
55%
Gene Interaction Network
Click a node to explore
ZCCHC4RBM15METTL3METTL14METTL16LSM12WTAP
PROTEIN STRUCTURE
Preparing viewer…
PDB6UCA · 3.10 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.00LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.75 [0.57–1.00]
RankingsWhere ZCCHC4 stands among ~20K protein-coding genes
  • #13,349of 20,598
    Most Researched24
  • #9,601of 17,882
    Most Constrained (LOEUF)1.00
Genes detectedZCCHC4
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
A comprehensive review of m6A/m6Am RNA methyltransferase structures.
PMID: 34023900
Nucleic Acids Res · 2021
1.00
2
RNA-binding protein ZCCHC4 promotes human cancer chemoresistance by disrupting DNA-damage-induced apoptosis.
PMID: 35853866
Signal Transduct Target Ther · 2022
0.90
3
N
PMID: 30531910
Nat Chem Biol · 2019
0.80
4
The human 18S rRNA m6A methyltransferase METTL5 is stabilized by TRMT112.
PMID: 31328227
Nucleic Acids Res · 2019
0.70
5
ZCCHC4 regulates esophageal cancer progression and cisplatin resistance through ROS/c-myc axis.
PMID: 39934309
Sci Rep · 2025
0.60