HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
LSM12
LSM12 homolog
Chromosome 17 · 17q21.31
NCBI Gene: 124801Ensembl: ENSG00000161654.10HGNC: HGNC:26407UniProt: K7ELG9
107PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Highly Constrained
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingcytoplasmRNA bindingrheumatic diseaseneoplasmoral squamous cell carcinomacolorectal carcinoma
✦AI Summary

LSM12 (Like-Sm protein 12) is a multifunctional RNA-binding protein with dual roles in calcium signaling and RNA splicing. Primary function: LSM12 acts as a NAADP-binding protein that confers NAADP sensitivity to two-pore channel (TPC) complexes, enabling NAADP-evoked Ca2+ release from endosomes and lysosomes 1. Unlike direct TPC binding, LSM12 functions as an accessory protein that works convergently with JPT2 to regulate endolysosomal calcium signaling and intracellular trafficking 2. Mechanism: LSM12 binds NAADP with high affinity and independently associates with TPC1 and TPC2 to support calcium-dependent cellular processes 1. Additionally, LSM12 regulates alternative splicing of target genes including USO1 and ARRB1, promoting exon inclusion or skipping patterns that affect protein isoform expression 3, 4. Disease relevance: LSM12 is significantly upregulated in multiple cancers—oral squamous cell carcinoma, lung squamous cell carcinoma, and colorectal cancer—where it promotes proliferation, migration, invasion, and inhibits apoptosis 3, 4, 5. In colorectal cancer, LSM12 activates WNT/CTNNB1 signaling by directly binding β-catenin and stabilizing its protein levels 5. LSM12 also sustains neuroprotection in C9-ALS/FTD by maintaining the nucleocytoplasmic RAN gradient through EPAC1 upregulation 6. Clinical significance: LSM12 is a potent diagnostic and prognostic biomarker for cancer, with potential as a therapeutic target in multiple malignancies 3.

Sources cited
1
LSM12 is a NAADP-binding protein that confers NAADP sensitivity to TPC complexes and supports NAADP-evoked Ca2+ signaling
PMID: 37607218
2
LSM12 is an NAADP-binding auxiliary protein necessary for NAADP activation of TPCs in mammalian cells
PMID: 40197126
3
LSM12 is upregulated in oral squamous cell carcinoma and promotes cell growth, migration, invasion; regulates USO1 alternative splicing
PMID: 35449073
4
LSM12 is highly expressed in lung squamous cell carcinoma and regulates ARRB1 alternative splicing to promote cancer progression
PMID: 40425760
5
LSM12 activates WNT/CTNNB1 signaling in colorectal cancer by directly binding and stabilizing β-catenin protein
PMID: 37303493
6
LSM12 sustains the nucleocytoplasmic RAN gradient through EPAC1 upregulation, protecting against C9-ALS/FTD pathology
PMID: 33362237
Disease Associationsⓘ20
rheumatic diseaseOpen Targets
0.11Weak
neoplasmOpen Targets
0.08Suggestive
oral squamous cell carcinomaOpen Targets
0.08Suggestive
colorectal carcinomaOpen Targets
0.07Suggestive
amyotrophic lateral sclerosisOpen Targets
0.07Suggestive
hepatocellular carcinomaOpen Targets
0.03Suggestive
cancerOpen Targets
0.03Suggestive
colorectal cancerOpen Targets
0.02Suggestive
osteoporosisOpen Targets
0.02Suggestive
squamous cell lung carcinomaOpen Targets
0.01Suggestive
marginal zone B-cell lymphomaOpen Targets
0.01Suggestive
breast cancerOpen Targets
0.01Suggestive
colon adenocarcinomaOpen Targets
0.01Suggestive
Invasive Breast CarcinomaOpen Targets
0.01Suggestive
cervical squamous cell carcinomaOpen Targets
0.01Suggestive
endocervical adenocarcinomaOpen Targets
0.01Suggestive
mouth diseaseOpen Targets
0.01Suggestive
respiratory system diseaseOpen Targets
0.01Suggestive
squamous cell carcinomaOpen Targets
0.01Suggestive
Wilson diseaseOpen Targets
0.01Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
LSM2Protein interaction100%ZCCHC4Protein interaction95%DDX6Protein interaction84%ATXN2Protein interaction84%ATXN2LProtein interaction84%NUFIP2Protein interaction84%
Tissue Expression6 tissues
Brain
100%
Liver
66%
Lung
51%
Ovary
35%
Bone Marrow
9%
Heart
8%
Gene Interaction Network
Click a node to explore
LSM12LSM2ZCCHC4DDX6ATXN2ATXN2LNUFIP2
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q3MHD2
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.14Highly Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.00 [0.00–0.14]
RankingsWhere LSM12 stands among ~20K protein-coding genes
  • #4,446of 20,598
    Most Researched107 · top quartile
  • #194of 17,882
    Most Constrained (LOEUF)0.14 · top 5%
Genes detectedLSM12
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Identification of RNA-splicing factor Lsm12 as a novel tumor-associated gene and a potent biomarker in Oral Squamous Cell Carcinoma (OSCC).
PMID: 35449073
J Exp Clin Cancer Res · 2022
1.00
2
TPCs: FROM PLANT TO HUMAN.
PMID: 40197126
Physiol Rev · 2025
0.90
3
LSM12 promotes the lung squamous cell carcinoma progression through mediating alternative splicing of ARRB1.
PMID: 40425760
Commun Biol · 2025
0.80
4
Convergent activation of two-pore channels mediated by the NAADP-binding proteins JPT2 and LSM12.
PMID: 37607218
Sci Signal · 2023
0.70
5
LSM12-EPAC1 defines a neuroprotective pathway that sustains the nucleocytoplasmic RAN gradient.
PMID: 33362237
PLoS Biol · 2020
0.60