HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
ZNF143
zinc finger protein 143
Chromosome 11 · 11p15.4
NCBI Gene: 7702Ensembl: ENSG00000166478.11HGNC: HGNC:12928UniProt: P52747
78PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
chromatin loop anchoring activitypositive regulation of transcription by RNA polymerase IIRNA polymerase II cis-regulatory region sequence-specific DNA bindingchromatin loopingneurodegenerative diseasePhenotypic abnormalitybenign neoplasminsomnia
✦AI Summary

ZNF143 is a C2H2-type zinc finger transcription factor that functions as a sequence-specific activator of genes transcribed by both RNA polymerase II and III 1. It recognizes and binds the Staf-binding site (SBS), a conserved DNA motif present in thousands of promoters genome-wide 2. ZNF143 facilitates RNA polymerase initiation and activates gene expression across diverse cellular processes 3. Beyond direct transcriptional activation, ZNF143 serves critical functions in chr11 organization by binding promoters and mediating chr11 loops connecting promoters to distal enhancers, operating as a key loop formation factor in cooperation with CTCF and cohesin 24. ZNF143 also acts as a mitotic bookmarking factor during cell cycle progression 2. Functionally, ZNF143 regulates nuclear-encoded mitochondrial genes and maintains mitochondrial DNA integrity through TFAM regulation, safeguarding mitochondrial activity 5. In disease contexts, ZNF143 expression is elevated in cancer cells and correlates with survival, proliferation, and invasion 2. Notably, ZNF143 activates CD19 promoter in B-ALL, and its dysfunction contributes to antigen escape mechanisms 6. Additionally, ZNF143 can mediate both activation and repression depending on molecular context, employing mechanisms including promoter occlusion and competition with other transcriptional regulators 3.

Sources cited
1
ZNF143 is a human ortholog of Xenopus Staf that activates transcription from both Pol II and Pol III promoters through Staf binding site recognition
PMID: 9705341
2
ZNF143 is a C2H2 zinc finger protein that binds chromatin and mediates chromatin looping with CTCF and cohesin; expression is elevated in cancer cells
PMID: 32318100
3
ZNF143 facilitates RNA polymerase initiation to activate genes and can also mediate repression through promoter occlusion and transcription roadblocking depending on molecular context
PMID: 39676670
4
ZNF143 regulates TFAM expression in coordination with DNMT3A and TET2 to maintain mitochondrial DNA integrity
PMID: 35931086
5
ZNF143 acts as a transcriptional activator of CD19 promoter in B-ALL, and its dysfunction contributes to antigen escape in immunotherapy-resistant disease
PMID: 36138187
6
ZNF143 is a pervasive zinc-finger transcriptional activator that regulates promoter efficiency for both protein-coding and small RNA genes and organizes higher-order chromatin structure
PMID: 33031894
7
ZNF143 initiates tissue-specific and basal expression of transaldolase, with expression correlating across human tissues
PMID: 14702349
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.45Moderate
Phenotypic abnormalityOpen Targets
0.26Weak
benign neoplasmOpen Targets
0.25Weak
insomniaOpen Targets
0.22Weak
methylmalonic aciduria and homocystinuriaOpen Targets
0.18Weak
lung adenocarcinomaOpen Targets
0.11Weak
chronic obstructive pulmonary diseaseOpen Targets
0.09Suggestive
gliomaOpen Targets
0.08Suggestive
gastric cancerOpen Targets
0.08Suggestive
breast cancerOpen Targets
0.08Suggestive
hepatocellular carcinomaOpen Targets
0.08Suggestive
Female infertility due to fertilization defectOpen Targets
0.08Suggestive
Rare genetic female infertilityOpen Targets
0.08Suggestive
non-small cell lung carcinomaOpen Targets
0.08Suggestive
azoospermiaOpen Targets
0.07Suggestive
oocyte maturation defect 14Open Targets
0.06Suggestive
oocyte maturation defect 5Open Targets
0.06Suggestive
Male infertility with spermatogenesis disorder due to single gene mutationOpen Targets
0.06Suggestive
female infertility due to oocyte meiotic arrestOpen Targets
0.06Suggestive
asthmaOpen Targets
0.06Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
GTF2BProtein interaction100%CTCFProtein interaction100%SMC3Protein interaction100%SP1Protein interaction99%SIX5Protein interaction91%TCP11Protein interaction89%
Tissue Expression6 tissues
Lung
100%
Ovary
93%
Heart
92%
Brain
78%
Bone Marrow
66%
Liver
57%
Gene Interaction Network
Click a node to explore
ZNF143GTF2BCTCFSMC3SP1SIX5TCP11
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt P52747
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.81LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.62 [0.48–0.81]
RankingsWhere ZNF143 stands among ~20K protein-coding genes
  • #6,124of 20,598
    Most Researched78
  • #6,715of 17,882
    Most Constrained (LOEUF)0.81
Genes detectedZNF143
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
ZNF143 in Chromatin Looping and Gene Regulation.
PMID: 32318100
Front Genet · 2020
1.00
2
NUDT21 limits CD19 levels through alternative mRNA polyadenylation in B cell acute lymphoblastic leukemia.
PMID: 36138187
Nat Immunol · 2022
0.90
3
DNA methyltransferase 3 alpha and TET methylcytosine dioxygenase 2 restrain mitochondrial DNA-mediated interferon signaling in macrophages.
PMID: 35931086
Immunity · 2022
0.80
4
Role of ZNF143 and Its Association with Gene Expression Patterns, Noncoding Mutations, and the Immune System in Human Breast Cancer.
PMID: 36675976
Life (Basel) · 2022
0.70
5
ZNF143 binds DNA and stimulates transcription initiation to activate and repress direct target genes.
PMID: 39676670
Nucleic Acids Res · 2025
0.60