HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
ZNF16
zinc finger protein 16
Chromosome 8 · 8q24.3
NCBI Gene: 7564Ensembl: ENSG00000170631.16HGNC: HGNC:12947UniProt: P17020
28PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
positive regulation of cell cycle phase transitionnucleusnucleoplasmprotein bindingneurodegenerative diseasegallbladder carcinomacancerneoplasm
✦AI Summary

ZNF16 is a multi-C2H2 zinc finger transcription factor with dual roles in hematopoietic differentiation and nucleolar regulation. In blood cell development, ZNF16 promotes erythroid and megakaryocytic differentiation of hematopoietic stem/progenitor cells by binding to the c-KIT gene promoter and suppressing c-KIT expression, thereby activating the c-Raf/MEK/ERK/c-Jun/HEY1/GATA1 signaling cascade 1. The protein contains a trans-activation domain (amino acids 49-197) and three nuclear localization signals within its zinc finger region, enabling its nuclear function 2. Beyond hematopoiesis, ZNF16 exhibits ubiquitous tissue expression and localizes to the nucleolus in a transcription-dependent manner, where it interacts with rDNA intergenic spacer regions to promote ribosomal RNA transcription 34. ZNF16 depletion reduces cell viability across all cell lines tested, indicating essential cellular functions 3. Clinically, ZNF16 is implicated in cancer progression: elevated ZNF16 expression correlates with shorter survival in gallbladder carcinoma patients 5, and the gene promotes malignancy in tongue squamous cell carcinoma 6. ZNF16 regulates cancer-associated genes including NRAS, BIRC3, and EGFR, and participates in pathways involving extracellular matrix interactions, focal adhesions, and viral infection responses 34.

Sources cited
1
ZNF16 promotes erythroid and megakaryocytic differentiation via c-KIT gene promoter binding and inhibition, activating the c-Raf/MEK/ERK/c-Jun/HEY1/GATA1 cascade
PMID: 24180487
2
ZNF16 contains a trans-activation domain at amino acids 49-197 and three nuclear localization signals within the zinc finger region
PMID: 19763908
3
ZNF16 localizes to the nucleolus, interacts with rDNA intergenic spacer regions, promotes rDNA transcription, and is essential for cell viability
PMID: 41279147
4
ZNF16 is a nucleolar-associated protein regulating rDNA expression and cancer-associated genes (NRAS, BIRC3, EGFR) in multiple cellular pathways
PMID: 41467516
5
ZNF16 expression is associated with shorter overall and relapse-free survival in gallbladder carcinoma patients
PMID: 32460791
6
ZNF16 promotes malignancy of tongue squamous cell carcinoma cells and is newly identified as a solid tumor-associated gene
PMID: 32432340
7
ZNF16 is part of the ancient mammalian chromosome 8q24.3 ZNF cluster, uniquely lacking a KRAB domain, with expression patterns suggesting roles in morphogenesis and differentiation
PMID: 20346131
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.37Weak
gallbladder carcinomaOpen Targets
0.08Suggestive
cancerOpen Targets
0.08Suggestive
neoplasmOpen Targets
0.02Suggestive
placenta praeviaOpen Targets
0.02Suggestive
non-alcoholic fatty liver diseaseOpen Targets
0.02Suggestive
ulcerative colitisOpen Targets
0.02Suggestive
gallbladder cancerOpen Targets
0.01Suggestive
carcinomaOpen Targets
0.01Suggestive
metastatic neoplasmOpen Targets
0.01Suggestive
cholangiocarcinomaOpen Targets
0.01Suggestive
tongue squamous cell carcinomaOpen Targets
0.01Suggestive
human papilloma virus infectionOpen Targets
0.01Suggestive
leukemiaOpen Targets
0.00Suggestive
osteosarcomaOpen Targets
0.00Suggestive
prostate cancerOpen Targets
0.00Suggestive
adenocarcinomaOpen Targets
0.00Suggestive
nail-patella syndromeOpen Targets
0.00Suggestive
breast cancerOpen Targets
0.00Suggestive
lymph node metastatic carcinomaOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
NOX4Protein interaction77%ZNF266Co-mentioned in literature50%PRAMEF27Shared pathway25%PRAMEF14Shared pathway25%PRAMEF15Shared pathway25%PRAMEF22Shared pathway25%
Tissue Expression6 tissues
Ovary
100%
Heart
73%
Brain
56%
Liver
47%
Bone Marrow
44%
Lung
41%
Gene Interaction Network
Click a node to explore
ZNF16NOX4ZNF266PRAMEF27PRAMEF14PRAMEF15PRAMEF22
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt P17020
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.15LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.74 [0.49–1.15]
RankingsWhere ZNF16 stands among ~20K protein-coding genes
  • #12,491of 20,598
    Most Researched28
  • #12,014of 17,882
    Most Constrained (LOEUF)1.15
Genes detectedZNF16
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
ZNF16 (HZF1) promotes erythropoiesis and megakaryocytopoiesis via regulation of the c-KIT gene.
PMID: 24180487
Biochem J · 2014
1.00
2
ZNF16 is a nucleolar-associated protein that regulates expression of the rDNA and cancer-associated genes.
PMID: 41279147
bioRxiv · 2025
0.90
3
Identification of the trans-activation domain and the nuclear location signals of human zinc finger protein HZF1 (ZNF16).
PMID: 19763908
Mol Biotechnol · 2010
0.80
4
Identification of metabolism-related subtypes and feature genes of pre-eclampsia.
PMID: 39930027
Sci Rep · 2025
0.70
5
Exome sequencing identifies new somatic alterations and mutation patterns of tongue squamous cell carcinoma in a Chinese population.
PMID: 32432340
J Pathol · 2020
0.60