HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
25 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
ABCF1
ATP binding cassette subfamily F member 1
Chromosome 6 · 6p21.33
NCBI Gene: 23Ensembl: ENSG00000204574.15HGNC: HGNC:70UniProt: A0A1U9X609
192PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
RESEARCH IMPACT
Trending
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
RNA bindingcytosolprotein bindingmembraneurinary bladder carcinomalung adenocarcinomahepatocellular carcinomaglioblastoma multiforme
✦AI Summary

ABCF1 is an ATP-binding cassette protein lacking a transmembrane domain that functions as a multifaceted regulator of immunity and gene expression rather than a transporter 1. Its primary canonical function involves mRNA translation initiation via Cap- and IRES-mediated mechanisms, though recent evidence reveals substantial noncanonical roles 1. Mechanistically, ABCF1 operates through diverse pathways. It acts as a cytosolic dsDNA sensor activating type I interferon responses and CXCL10 production in airway epithelial cells 2. Against hepatitis B virus, ABCF1 recognizes cccDNA and forms phase-separated condensates that inhibit viral transcription while activating interferon signaling 3. Additionally, ABCF1 binds 2'-5' oligoadenylates, nucleotide second messengers in innate immunity, though functional consequences remain unclear 4. In glioblastoma, ABCF1 enhances cell proliferation and invasion by upregulating the CXCL12/CXCR4 axis and activating PI3K/AKT signaling 5. Regarding disease relevance, ABCF1-K430 lactylation promotes hepatocellular carcinoma progression through nuclear translocation and transcriptional activation of the KDM3A-H3K9me2-HIF1A axis 6, establishing a lactate-ABCF1-HIF1A feedback loop 7. However, ABCF1's role in TNF-α and Poly(I:C)-induced inflammatory responses appears independent of NF-κB activation in airway epithelial cells 8, highlighting context-dependent functions. These findings position ABCF1 as a potential therapeutic target across cancers and infectious diseases.

Sources cited
1
ABCF1 is an ATP-binding cassette protein lacking a transmembrane domain that functions as a multifaceted regulator of immunity and gene expression rather than a transporter .
PMID: 40513648
2
It acts as a cytosolic dsDNA sensor activating type I interferon responses and CXCL10 production in airway epithelial cells .
PMID: 33042865
3
Against hepatitis B virus, ABCF1 recognizes cccDNA and forms phase-separated condensates that inhibit viral transcription while activating interferon signaling .
PMID: 39498874
4
Additionally, ABCF1 binds 2'-5' oligoadenylates, nucleotide second messengers in innate immunity, though functional consequences remain unclear .
PMID: 37676257
5
In glioblastoma, ABCF1 enhances cell proliferation and invasion by upregulating the CXCL12/CXCR4 axis and activating PI3K/AKT signaling .
PMID: 37757768
6
Regarding disease relevance, ABCF1-K430 lactylation promotes hepatocellular carcinoma progression through nuclear translocation and transcriptional activation of the KDM3A-H3K9me2-HIF1A axis , establishing a lactate-ABCF1-HIF1A feedback loop .
PMID: 39753865
7
Regarding disease relevance, ABCF1-K430 lactylation promotes hepatocellular carcinoma progression through nuclear translocation and transcriptional activation of the KDM3A-H3K9me2-HIF1A axis , establishing a lactate-ABCF1-HIF1A feedback loop .
PMID: 36625413
8
However, ABCF1's role in TNF-α and Poly(I:C)-induced inflammatory responses appears independent of NF-κB activation in airway epithelial cells , highlighting context-dependent functions.
PMID: 37679460
Disease Associationsⓘ20
urinary bladder carcinomaOpen Targets
0.07Suggestive
lung adenocarcinomaOpen Targets
0.04Suggestive
hepatocellular carcinomaOpen Targets
0.04Suggestive
glioblastoma multiformeOpen Targets
0.02Suggestive
neoplasmOpen Targets
0.02Suggestive
cancerOpen Targets
0.02Suggestive
lung cancerOpen Targets
0.02Suggestive
dengue diseaseOpen Targets
0.01Suggestive
obesityOpen Targets
0.01Suggestive
AnxietyOpen Targets
0.01Suggestive
schizophreniaOpen Targets
0.01Suggestive
colorectal carcinomaOpen Targets
0.01Suggestive
autoimmune pancreatitisOpen Targets
0.01Suggestive
infectionOpen Targets
0.01Suggestive
colorectal cancerOpen Targets
0.01Suggestive
colon carcinomaOpen Targets
0.01Suggestive
glioblastomaOpen Targets
0.01Suggestive
Graves ophthalmopathyOpen Targets
0.01Suggestive
leukemiaOpen Targets
0.01Suggestive
mastitisOpen Targets
0.01Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
RPS23Protein interaction100%RPL39Protein interaction100%RPL38Protein interaction100%RPL36AProtein interaction100%RPL32Protein interaction100%RPS3Protein interaction100%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
93%
Lung
89%
Liver
79%
Heart
78%
Ovary
62%
Gene Interaction Network
Click a node to explore
ABCF1RPS23RPL39RPL38RPL36ARPL32RPS3
PROTEIN STRUCTURE
Preparing viewer…
PDB5ZXD · 2.29 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.69LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.57 [0.47–0.69]
RankingsWhere ABCF1 stands among ~20K protein-coding genes
  • #2,229of 20,598
    Most Researched192 · top quartile
  • #5,199of 17,882
    Most Constrained (LOEUF)0.69
Genes detectedABCF1
Sources retrieved25 papers
Response time—
📄 Sources
25▼
1
ABCF1-K430-Lactylation promotes HCC malignant progression via transcriptional activation of HIF1 signaling pathway.
PMID: 39753865
Cell Death Differ · 2025
1.00
2
Global profiling of protein lysine lactylation and potential target modified protein analysis in hepatocellular carcinoma.
PMID: 36625413
Proteomics · 2023
0.90
3
DNA Sensor ABCF1 Phase Separates With cccDNA to Inhibit Hepatitis B Virus Replication.
PMID: 39498874
Adv Sci (Weinh) · 2024
0.80
4
TNF-α and Poly(I:C) induction of A20 and activation of NF-κB signaling are independent of ABCF1 in human airway epithelial cells.
PMID: 37679460
Sci Rep · 2023
0.70
5
m
PMID: 29107534
Mol Cell · 2017
0.68