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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
AMELX
amelogenin X-linked
Chromosome X Β· Xp22.2
NCBI Gene: 265Ensembl: ENSG00000125363.14HGNC: HGNC:461UniProt: Q99217
68PubMed Papers
21Diseases
0Drugs
21Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
extracellular matrixenamel mineralizationtooth mineralizationprotein bindingHypomaturation amelogenesis imperfectaamelogenesis imperfectaHypoplastic amelogenesis imperfectavein disorder
✦AI Summary

AMELX (amelogenin X-linked) encodes a major structural protein of the developing enamel matrix 1 that plays a critical role in biomineralization and enamel formation. During amelogenesis, AMELX regulates crystallite formation and the structural organization of enamel during the secretory and maturation stages 2. The protein functions in calcium ion binding and hydroxyapatite interactions, essential for proper enamel mineralization 3. Mutations in AMELX cause X-linked amelogenesis imperfecta (AI types IE, IIB, and IIC), characterized by hypoplastic (thin) and/or hypomaturation (soft) enamel defects 4. Genotype-phenotype correlations reveal that amorphic mutations (large deletions, 5' truncations) cause hypoplastic-hypomaturation enamel with "snow-capped" appearance due to complete loss of function, while neomorphic variants (signal peptide defects, 3' truncations) produce severe hypoplastic/aplastic enamel through toxic cellular effects, including endoplasmic reticulum stress and potential apoptosis 4. AI represents an inherited group of developmental conditions affecting enamel structure and appearance in all or nearly all teeth, with prevalence ranging from 1:700 to 1:14,000 5. AMELX polymorphisms may also influence dental caries susceptibility, though evidence for specific variants remains limited 6. Clinical management requires early intervention with preventive and restorative approaches throughout childhood into adulthood 5.

Sources cited
1
AMELX mutations cause amelogenesis imperfecta and regulate enamel formation during mineralization and maturation phases
PMID: 39321764
2
Amelogenin is a major protein constituent of developing enamel matrix with two genes on X and Y chromosomes
PMID: 7626398
3
AMELX mutations cause X-linked AI types IE, IIB, and IIC with hypoplastic/hypomaturation enamel; genotype-phenotype relationships between amorphic and neomorphic mutations
PMID: 38892321
4
Amelogenesis imperfecta is caused by AMELX mutations in X-linked forms with prevalence 1:700 to 1:14,000; requires long-term clinical management
PMID: 17408482
5
AMELX is the predominant gene in dental enamel development and amelogenesis imperfecta pathogenesis
PMID: 30799455
6
AMELX polymorphisms have limited association with dental caries susceptibility in meta-analysis
PMID: 32375748
7
AMELX among genes involved in enamel formation affecting caries susceptibility with up to 50% genetic contribution
PMID: 28266114
Disease Associationsβ“˜21
Hypomaturation amelogenesis imperfectaOpen Targets
0.76Strong
amelogenesis imperfectaOpen Targets
0.67Moderate
Hypoplastic amelogenesis imperfectaOpen Targets
0.49Moderate
lymphatic system diseaseOpen Targets
0.20Weak
vein disorderOpen Targets
0.20Weak
genetic disorderOpen Targets
0.19Weak
Varicose veinsOpen Targets
0.13Weak
dentin dysplasia type IOpen Targets
0.11Weak
amelogenesis imperfecta hypomaturation type 2A4Open Targets
0.11Weak
amelogenesis imperfecta, IIa 1KOpen Targets
0.11Weak
amelogenesis imperfecta type 3BOpen Targets
0.11Weak
keratosis pilaris atrophicansOpen Targets
0.11Weak
amelogenesis imperfecta, type ijOpen Targets
0.11Weak
amelogenesis imperfecta type 1AOpen Targets
0.11Weak
dentin dysplasia type IIOpen Targets
0.11Weak
dentinogenesis imperfecta type 3Open Targets
0.10Weak
hypomaturation-hypoplastic amelogenesis imperfecta with taurodontismOpen Targets
0.10Weak
tooth agenesisOpen Targets
0.10Weak
Dental ankylosisOpen Targets
0.10Suggestive
trichodysplasia-amelogenesis imperfecta syndromeOpen Targets
0.10Suggestive
Amelogenesis imperfecta 1EUniProt
Pathogenic Variants21
NM_001142.2(AMELX):c.166C>A (p.Pro56Thr)Pathogenic
Amelogenesis imperfecta type 1E|not provided|AMELX-related disorder
β˜…β˜†β˜†β˜†2025β†’ Residue 56
NM_001142.2(AMELX):c.431del (p.Pro144fs)Likely pathogenic
Amelogenesis imperfecta type 1E
β˜…β˜†β˜†β˜†2025β†’ Residue 144
NM_001142.2(AMELX):c.144+1G>ALikely pathogenic
Amelogenesis imperfecta type 1E
β˜…β˜†β˜†β˜†2024
NM_001142.2(AMELX):c.167C>T (p.Pro56Leu)Pathogenic
Amelogenesis imperfecta type 1E
β˜…β˜†β˜†β˜†2024β†’ Residue 56
NM_001142.2(AMELX):c.3G>A (p.Met1Ile)Likely pathogenic
Amelogenesis imperfecta type 1E
β˜…β˜†β˜†β˜†2024β†’ Residue 1
NM_001142.2(AMELX):c.11G>A (p.Trp4Ter)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2023β†’ Residue 4
NM_001142.2(AMELX):c.47C>A (p.Ala16Asp)Likely pathogenic
Amelogenesis imperfecta type 1E
β˜…β˜†β˜†β˜†2023β†’ Residue 16
NM_001142.2(AMELX):c.289C>T (p.Gln97Ter)Likely pathogenic
Amelogenesis imperfecta type 1E
β˜…β˜†β˜†β˜†2021β†’ Residue 97
NM_001142.2(AMELX):c.143del (p.Pro48fs)Pathogenic
Amelogenesis imperfecta
β˜†β˜†β˜†β˜†2018β†’ Residue 48
NC_000023.10:g.11285049_11381288delPathogenic
Amelogenesis imperfecta, type 1E, with snow-capped teeth
β˜†β˜†β˜†β˜†2012
NM_001142.2(AMELX):c.11G>C (p.Trp4Ser)Pathogenic
Amelogenesis imperfecta type 1E
β˜†β˜†β˜†β˜†2004β†’ Residue 4
NM_001142.2(AMELX):c.2T>C (p.Met1Thr)Pathogenic
Amelogenesis imperfecta type 1E
β˜†β˜†β˜†β˜†2004β†’ Residue 1
NM_001142.2(AMELX):c.529G>T (p.Glu177Ter)Pathogenic
Amelogenesis imperfecta type 1E
β˜†β˜†β˜†β˜†2002β†’ Residue 177
NM_001142.2(AMELX):c.113del (p.Pro38fs)Pathogenic
Amelogenesis imperfecta type 1E
β˜†β˜†β˜†β˜†2002β†’ Residue 38
NM_001142.2(AMELX):c.110C>T (p.Thr37Ile)Pathogenic
Amelogenesis imperfecta type 1E
β˜†β˜†β˜†β˜†2002β†’ Residue 37
NM_001142.2(AMELX):c.499del (p.Leu167fs)Pathogenic
Amelogenesis imperfecta type 1E
β˜†β˜†β˜†β˜†2002β†’ Residue 167
NM_001142.2(AMELX):c.378del (p.Tyr127fs)Pathogenic
Amelogenesis imperfecta type 1E
β˜†β˜†β˜†β˜†2002β†’ Residue 127
NM_001142.2(AMELX):c.14_22del (p.Ile5_Ala8delinsThr)Pathogenic
Amelogenesis imperfecta type 1E
β˜†β˜†β˜†β˜†1995β†’ Residue 5
NC_000023.11:g.(11295935_11295938)_(11300658_11300661)delPathogenic
Amelogenesis imperfecta type 1E
β˜†β˜†β˜†β˜†1995
NM_001142.2(AMELX):c.88A>C (p.Asn30His)Pathogenic
Amelogenesis imperfecta
β˜†β˜†β˜†β˜†β†’ Residue 30
View on ClinVar β†—
Related Genes
TUFT1Protein interaction99%WDR72Protein interaction97%TBL1YProtein interaction90%PRKXProtein interaction85%OSTCProtein interaction84%GHRHProtein interaction83%
Tissue Expression6 tissues
Lung
100%
Ovary
100%
Brain
100%
Heart
0%
Bone Marrow
0%
Liver
0%
Gene Interaction Network
Click a node to explore
AMELXTUFT1WDR72TBL1YPRKXOSTCGHRH
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q99217
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.99LoF Tolerant
pLIβ“˜
0.02Tolerant
Observed/Expected LoF0.57 [0.34–0.99]
RankingsWhere AMELX stands among ~20K protein-coding genes
  • #6,874of 20,598
    Most Researched68
  • #2,150of 5,498
    Most Pathogenic Variants21
  • #9,562of 17,882
    Most Constrained (LOEUF)0.99
Genes detectedAMELX
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Developmental Defects of Enamel.
PMID: 39321764
Monogr Oral Sci Β· 2024
1.00
2
Amelogenesis imperfecta.
PMID: 17408482
Orphanet J Rare Dis Β· 2007
0.90
3
PMID: 38892321
Int J Mol Sci Β· 2024
0.80
4
The amelogenin gene.
PMID: 7626398
Int J Dev Biol Β· 1995
0.70
5
Association of LTF, ENAM, and AMELX polymorphisms with dental caries susceptibility: a meta-analysis.
PMID: 32375748
BMC Oral Health Β· 2020
0.60