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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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BRPF3
bromodomain and PHD finger containing 3
Chromosome 6 · 6p21.31
NCBI Gene: 27154Ensembl: ENSG00000096070.19HGNC: HGNC:14256UniProt: F6XDC4
30PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Highly Constrained
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
histone H3K14 acetyltransferase activityhistone H4K5 acetyltransferase activityhistone H4K8 acetyltransferase activityhistone H4K12 acetyltransferase activityneurodegenerative diseaseAbnormality of the gastrointestinal tractsialolithiasisautism
✦AI Summary

BRPF3 (bromodomain and PHD finger containing 3) functions as a scaffold subunit in histone acetyltransferase complexes, particularly the HBO1 complex, which exhibits histone H3 acetyltransferase activity 1. The protein plays a crucial role in DNA replication initiation by directing HBO1 specificity toward histone H3 lysine 14 acetylation (H3K14ac), facilitating activation of replication origins 2. BRPF3 forms a tetrameric complex with HBO1 and shows high enrichment at ORC1-binding sites and replication origins near transcription start sites, where it is necessary for efficient origin activation through CDC45 recruitment 2. Unlike its paralogs BRPF1 and BRPF2, BRPF3 knockout mice show no obvious developmental defects, suggesting it is dispensable for normal mouse development and survival 1. In disease contexts, BRPF3 has been identified as a potential therapeutic target for migraine through genome-wide Mendelian randomization studies 3. Additionally, BRPF3 targeting shows promise in moderately reversing olaparib resistance in high-grade serous ovarian carcinoma, where its bromodomain function appears more critical than direct histone acetyltransferase activity 4. The protein exhibits dynamic spatiotemporal expression during embryogenesis with high expression in adult brain and testis 1.

Sources cited
1
BRPF3 functions as scaffold subunit in HBO1 complex and is dispensable for mouse development
PMID: 26677226
2
BRPF3 regulates DNA replication initiation through H3K14 acetylation and origin activation
PMID: 26620551
3
BRPF3 identified as potential therapeutic target for migraine
PMID: 38867170
4
BRPF3 targeting moderately reverses olaparib resistance in ovarian carcinoma
PMID: 37493106
⚠Limited data available — This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.37Weak
Abnormality of the gastrointestinal tractOpen Targets
0.24Weak
sialolithiasisOpen Targets
0.24Weak
autismOpen Targets
0.12Weak
colitisOpen Targets
0.12Weak
Cranial asymmetryOpen Targets
0.12Weak
Delayed speech and language developmentOpen Targets
0.12Weak
atrial fibrillationOpen Targets
0.09Suggestive
ulcerative colitisOpen Targets
0.08Suggestive
maturity-onset diabetes of the young type 3Open Targets
0.04Suggestive
MODYOpen Targets
0.04Suggestive
hyperinsulinism due to INSR deficiencyOpen Targets
0.04Suggestive
3-hydroxy-3-methylglutaryl-CoA synthase deficiencyOpen Targets
0.04Suggestive
exercise-induced hyperinsulinismOpen Targets
0.04Suggestive
Glycogen storage disease due to hepatic glycogen synthase deficiencyOpen Targets
0.04Suggestive
glycogen storage disorder due to hepatic glycogen synthase deficiencyOpen Targets
0.04Suggestive
hyperproinsulinemiaOpen Targets
0.04Suggestive
hyperinsulinism due to glucokinase deficiencyOpen Targets
0.03Suggestive
glycogen storage disease IIIOpen Targets
0.03Suggestive
iridocyclitisOpen Targets
0.02Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
ING5Protein interaction100%ING4Protein interaction100%KAT7Protein interaction100%KAT5Protein interaction100%BRPF1Protein interaction91%TP53Protein interaction86%
Tissue Expression6 tissues
Brain
100%
Bone Marrow
89%
Ovary
70%
Liver
60%
Heart
54%
Lung
50%
Gene Interaction Network
Click a node to explore
BRPF3ING5ING4KAT7KAT5BRPF1TP53
PROTEIN STRUCTURE
Preparing viewer…
PDB3PFS · 1.90 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.26Highly Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.17 [0.12–0.26]
RankingsWhere BRPF3 stands among ~20K protein-coding genes
  • #11,864of 20,598
    Most Researched30
  • #808of 17,882
    Most Constrained (LOEUF)0.26 · top 5%
Genes detectedBRPF3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Identifying therapeutic target genes for migraine by systematic druggable genome-wide Mendelian randomization.
PMID: 38867170
J Headache Pain · 2024
1.00
2
BRPF3-HBO1 regulates replication origin activation and histone H3K14 acetylation.
PMID: 26620551
EMBO J · 2016
0.90
3
Biological function and histone recognition of family IV bromodomain-containing proteins.
PMID: 28500727
J Cell Physiol · 2018
0.80
4
Targeting BRPF3 moderately reverses olaparib resistance in high grade serous ovarian carcinoma.
PMID: 37493106
Mol Carcinog · 2023
0.70
5
MOZ and MORF acetyltransferases: Molecular interaction, animal development and human disease.
PMID: 25920810
Biochim Biophys Acta · 2015
0.60