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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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CDYL2
chromodomain Y like 2
Chromosome 16 · 16q23.2
NCBI Gene: 124359Ensembl: ENSG00000166446.16HGNC: HGNC:23030UniProt: Q8N8U2
29PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingtranscription corepressor activitynucleusnegative regulation of DNA-templated transcriptioninflammatory bowel diseaseandrogenetic alopeciaalcohol drinkingtooth disease
✦AI Summary

CDYL2 (chr16 Y-like 2) is an epigenetic reader protein with isoform-specific functions in transcriptional regulation and genome stability. CDYL2 contains a chr16 that binds lysine-methylated histone motifs, including H3K27me3 and H3K9me3, enabling its recruitment to chr16 1. The gene produces multiple transcript variants with distinct functions: CDYL2b acts as a tumor suppressor in prostate and breast cancers by repressing metastasis-promoting genes and upregulating anti-oncogenic transcription factors 23, while CDYL2a promotes breast cancer proliferation through modulation of alternative splicing 3. At pericentromeres, CDYL2 functions as an adaptor protein linking H3K9me3 recognition with mitotic regulators CHAMP1 and POGZ to maintain genome stability 4. In hepatocellular carcinoma, STAT5A-regulated CDYL2 suppresses cell proliferation by transcriptionally repressing SLC7A6, thereby inhibiting mTORC1 signaling 5. Clinically, low CDYL2 expression correlates with poor prognosis in multiple cancers, including increased metastasis and disease recurrence in prostate cancer 2. CDYL2 dysfunction has also been associated with knee osteoarthritis progression 6. These findings establish CDYL2 as a context-dependent regulator with potential therapeutic implications.

Sources cited
1
CDYL2b suppresses prostate tumorigenesis by upregulating transcription factors HES7 and KLF17; low CDYL2 expression associated with metastasis and reduced survival
PMID: 40812719
2
CDYL2 recruits to pericentromeres via H3K9me3 binding and functions as adaptor linking H3K9me3 with mitotic regulators CHAMP1 and POGZ for genome stability
PMID: 36658409
3
STAT5A regulates CDYL2 expression; CDYL2 inhibits HCC proliferation by suppressing SLC7A6 and mTORC1 pathway
PMID: 35314791
4
CDYL2 generates four transcript variants with opposite functions: CDYL2a promotes breast cancer proliferation via alternative splicing; CDYL2b suppresses metastasis by transcriptional repression
PMID: 32373210
5
CDYL2 chromodomain shows preferential binding to H3K27me3 over H3K27me3 and H3K9me3, providing structural basis for selective methylated histone recognition
PMID: 32470319
6
CDYL2 locus associated with knee osteoarthritis progression in genome-wide association study
PMID: 40554537
7
CDYL2 chromodomain binds multiple lysine-methylated ARK(S/T) motifs with comparable strength, enabling diverse epigenetic regulatory functions
PMID: 18450745
8
CDYL2 is abundantly expressed in testis and plays role in spermatogenesis; generates multiple transcript variants
PMID: 18371128
Disease Associationsⓘ20
inflammatory bowel diseaseOpen Targets
0.47Moderate
androgenetic alopeciaOpen Targets
0.34Weak
alcohol drinkingOpen Targets
0.29Weak
tooth diseaseOpen Targets
0.28Weak
idiopathic pulmonary fibrosisOpen Targets
0.28Weak
polycythemiaOpen Targets
0.27Weak
epilepsyOpen Targets
0.27Weak
acute tonsillitisOpen Targets
0.25Weak
breast carcinomaOpen Targets
0.24Weak
injuryOpen Targets
0.23Weak
thrombophiliaOpen Targets
0.22Weak
luminal A breast carcinomaOpen Targets
0.15Weak
breast cancerOpen Targets
0.09Suggestive
cancerOpen Targets
0.04Suggestive
prostate cancerOpen Targets
0.04Suggestive
cartilage diseaseOpen Targets
0.04Suggestive
joint diseaseOpen Targets
0.04Suggestive
chondromalaciaOpen Targets
0.04Suggestive
obesityOpen Targets
0.04Suggestive
ulcerative colitisOpen Targets
0.03Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
HIRIP3Shared pathway100%HMGN3Shared pathway100%HMGN4Shared pathway100%MSL3Shared pathway100%KLF12Shared pathway100%FAM50BShared pathway100%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
52%
Liver
16%
Lung
16%
Heart
10%
Ovary
3%
Gene Interaction Network
Click a node to explore
CDYL2HIRIP3HMGN3HMGN4MSL3KLF12FAM50B
PROTEIN STRUCTURE
Preparing viewer…
PDB8SP6 · 1.45 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.71LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.50 [0.36–0.71]
RankingsWhere CDYL2 stands among ~20K protein-coding genes
  • #12,120of 20,598
    Most Researched29
  • #5,482of 17,882
    Most Constrained (LOEUF)0.71
Genes detectedCDYL2
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Anti-tumor activity of CDYL2b in prostate cancer.
PMID: 40812719
Cancer Lett · 2025
1.00
2
Chromodomain on Y-like 2 (CDYL2) implicated in mitosis and genome stability regulation via interaction with CHAMP1 and POGZ.
PMID: 36658409
Cell Mol Life Sci · 2023
0.90
3
STAT5A modulates CDYL2/SLC7A6 pathway to inhibit the proliferation and invasion of hepatocellular carcinoma by targeting to mTORC1.
PMID: 35314791
Oncogene · 2022
0.80
4
Discrete functional and mechanistic roles of chromodomain Y-like 2 (CDYL2) transcript variants in breast cancer growth and metastasis.
PMID: 32373210
Theranostics · 2020
0.70
5
Structural Basis for the Binding Selectivity of Human CDY Chromodomains.
PMID: 32470319
Cell Chem Biol · 2020
0.60