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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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HMGN3
high mobility group nucleosomal binding domain 3
Chromosome 6 · 6q14.1
NCBI Gene: 9324Ensembl: ENSG00000118418.16HGNC: HGNC:12312UniProt: A0A087WZE9
41PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
nucleoplasmprotein bindingchromatin bindingchromatin organizationTietze syndromepremature birthpreeclampsiaMODY
✦AI Summary

HMGN3 (high mobility group nucleosomal binding domain 3) is a chr6-binding nuclear protein that regulates gene transcription by modulating nucleosome structure and recruiting transcription factors. The protein plays critical roles in pancreatic beta cell function, where it binds to the GLUT2 glucose transporter promoter alongside PDX1 to regulate glucose-stimulated insulin secretion 1. Loss of HMGN3 in mice impairs insulin secretion and leads to diabetic phenotypes 1. HMGN3 also contributes to DNA G-quadruplex recognition and CTCF recruitment to chr6 2. In disease contexts, HMGN3 shows altered expression patterns across multiple conditions: it is upregulated in clear cell renal cell carcinoma and associated with fatty acid metabolism reprogramming 3, promotes cholangiocarcinoma cell migration by repressing epithelial regulators through SNAI2-dependent mechanisms 4, and is downregulated in dilated cardiomyopathy where its depletion promotes cardiomyocyte apoptosis 5. Additionally, HMGN3 regulates trophoblast stem cell conversion and placental development 67. The protein's dysfunction is implicated in Huntington's disease transcriptomic alterations 8, highlighting its broad importance in cellular function and disease pathogenesis.

Sources cited
1
HMGN3 binds to GLUT2 promoter with PDX1 and regulates glucose-stimulated insulin secretion; loss leads to diabetic phenotype in mice
PMID: 19651901
2
HMGN3 recognizes G-quadruplexes and contributes to CTCF recruitment to chromatin
PMID: 34209337
3
HMGN3 is upregulated in clear cell renal cell carcinoma and associated with fatty acid metabolism reprogramming
PMID: 40539074
4
HMGN3 promotes cholangiocarcinoma migration by repressing epithelial regulators through SNAI2-dependent mechanisms
PMID: 35635715
5
HMGN3 is downregulated in dilated cardiomyopathy and its depletion promotes cardiomyocyte apoptosis
PMID: 41117190
6
HMGN3 overexpression facilitates trophoblast stem cell conversion
PMID: 35354046
7
HMGN3 is involved in trophoblast invasion regulation in early-onset preeclampsia
PMID: 36412513
8
HMGN3 shows altered expression in Huntington's disease transcriptomic profiles
PMID: 34111223
Disease Associationsⓘ20
Tietze syndromeOpen Targets
0.30Weak
premature birthOpen Targets
0.27Weak
preeclampsiaOpen Targets
0.27Weak
MODYOpen Targets
0.10Suggestive
type 1 diabetes mellitusOpen Targets
0.08Suggestive
maturity-onset diabetes of the young type 3Open Targets
0.07Suggestive
maturity-onset diabetes of the young type 10Open Targets
0.07Suggestive
diabetes mellitusOpen Targets
0.07Suggestive
hyperinsulinism due to glucokinase deficiencyOpen Targets
0.06Suggestive
hyperproinsulinemiaOpen Targets
0.06Suggestive
maturity-onset diabetes of the young type 4Open Targets
0.06Suggestive
hyperinsulinism due to INSR deficiencyOpen Targets
0.06Suggestive
maturity-onset diabetes of the young type 2Open Targets
0.06Suggestive
maturity-onset diabetes of the young type 6Open Targets
0.06Suggestive
Huntington diseaseOpen Targets
0.06Suggestive
diabetes mellitus, transient neonatal, 2Open Targets
0.06Suggestive
type 2 diabetes mellitusOpen Targets
0.05Suggestive
diabetes mellitus, permanent neonatal 4Open Targets
0.05Suggestive
exercise-induced hyperinsulinismOpen Targets
0.05Suggestive
transient neonatal diabetes mellitusOpen Targets
0.05Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
H2BK1Shared pathway100%H2BW2Shared pathway100%ZCWPW2Shared pathway100%MSL3BShared pathway100%CDYL2Shared pathway100%ZNF618Shared pathway100%
Tissue Expression6 tissues
Heart
100%
Liver
47%
Brain
46%
Ovary
39%
Lung
35%
Bone Marrow
35%
Gene Interaction Network
Click a node to explore
HMGN3H2BK1H2BW2ZCWPW2MSL3BCDYL2ZNF618
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q15651
View on AlphaFold ↗
RankingsWhere HMGN3 stands among ~20K protein-coding genes
  • #10,019of 20,598
    Most Researched41
Genes detectedHMGN3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Cellular hierarchy framework based on single-cell and bulk RNA sequencing reveals fatty acid metabolic biomarker MYDGF as a therapeutic target for ccRCC.
PMID: 40539074
Front Immunol · 2025
1.00
2
HMGN3 represses transcription of epithelial regulators to promote migration of cholangiocarcinoma in a SNAI2-dependent manner.
PMID: 35635715
FASEB J · 2022
0.90
3
A meta-analysis of transcriptomic profiles of Huntington's disease patients.
PMID: 34111223
PLoS One · 2021
0.80
4
WTAP dysregulation-mediated HMGN3-m6A modification inhibited trophoblast invasion in early-onset preeclampsia.
PMID: 36412513
FASEB J · 2022
0.70
5
Chromatin structural gene expression stratifies cardiac cell populations in health and disease.
PMID: 41117190
Epigenetics · 2025
0.60