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GeneE
7 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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ZCWPW2
zinc finger CW-type and PWWP domain containing 2
Chromosome 3 · 3p24.1
NCBI Gene: 152098Ensembl: ENSG00000206559.9HGNC: HGNC:23574UniProt: Q504Y3
11PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindinghistone H3K4me3 reader activitynucleuszinc ion bindingcolorectal cancerDNA methylationCOVID-19smoking initiation
✦AI Summary

ZCWPW2 is a histone methylation reader protein that recognizes H3K4 methylation marks with binding preference for H3K4me3 > H3K4me2 > H3K4me1 > H3K4me0 1. The protein's CW domain forms a methyllysine recognition cage through conserved tryptophan residues that interact with trimethylated lysine-4 on histone H3 1. Mechanistically, ZCWPW2 functions as an essential component of meiotic recombination by forming a complex with ZCWPW1 and interacting with recombination-associated proteins 2. This complex recognizes dual H3K4me3 and H3K36me3 marks deposited by PRDM9 at recombination hotspots, while also binding promoter regions to regulate meiotic transcription 2. The ZCWPW1-ZCWPW2 complex enhances lactylation of recombination proteins through interaction with LDHA and EP300, stabilizing their abundance 2. Clinically, ZCWPW2 deficiency causes meiotic recombination defects including impaired homologous chromosome 3 and defective DNA double-strand break repair, leading to infertility 2. Additionally, ZCWPW2 genetic variants associate with increased glycosylated hemoglobin in diabetic nephropathy 3. Phylogenetic analysis reveals tight coevolution of ZCWPW2 with PRDM9 across vertebrates, suggesting its role as a key meiotic recombination interactor 4.

Sources cited
1
ZCWPW2 binds H3K4 methylation marks with preference H3K4me3 > H3K4me2 > H3K4me1 > H3K4me0; CW domain structure and mechanism
PMID: 26933034
2
ZCWPW2 deficiency causes meiotic recombination defects; forms complex with ZCWPW1; regulates lactylation of recombination proteins; role in homologous chromosome synapsis
PMID: 41574437
3
ZCWPW2 risk genotype associated with increased glycosylated hemoglobin in diabetic nephropathy
PMID: 38189041
4
ZCWPW2 coevolved with PRDM9 across vertebrates; expected to be key meiotic recombination interactor
PMID: 35217607
⚠Limited data available — This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ20
colorectal cancerOpen Targets
0.28Weak
DNA methylationOpen Targets
0.20Weak
COVID-19Open Targets
0.16Weak
smoking initiationOpen Targets
0.13Weak
AnisometropiaOpen Targets
0.12Weak
Parkinson diseaseOpen Targets
0.11Weak
type 2 diabetes mellitusOpen Targets
0.10Suggestive
HydrocephalusOpen Targets
0.08Suggestive
Abruptio PlacentaeOpen Targets
0.08Suggestive
Limb painOpen Targets
0.08Suggestive
connective tissue diseaseOpen Targets
0.07Suggestive
Abdominal painOpen Targets
0.06Suggestive
HeadacheOpen Targets
0.06Suggestive
multiple sclerosisOpen Targets
0.05Suggestive
AphasiaOpen Targets
0.05Suggestive
nervous system cancerOpen Targets
0.04Suggestive
systemic lupus erythematosusOpen Targets
0.03Suggestive
brain cancerOpen Targets
0.03Suggestive
primary thrombocytopeniaOpen Targets
0.03Suggestive
non-Hodgkins lymphomaOpen Targets
0.03Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
HIRIP3Shared pathway100%HMGN3Shared pathway100%HMGN4Shared pathway100%MSL3Shared pathway100%KLF12Shared pathway100%FAM50BShared pathway100%
Tissue Expression6 tissues
Heart
100%
Ovary
71%
Brain
34%
Lung
33%
Bone Marrow
23%
Liver
22%
Gene Interaction Network
Click a node to explore
ZCWPW2HIRIP3HMGN3HMGN4MSL3KLF12FAM50B
PROTEIN STRUCTURE
Preparing viewer…
PDB4Z0O · 1.57 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.33LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.01 [0.78–1.33]
RankingsWhere ZCWPW2 stands among ~20K protein-coding genes
  • #16,946of 20,598
    Most Researched11
  • #13,929of 17,882
    Most Constrained (LOEUF)1.33
Genes detectedZCWPW2
Sources retrieved7 papers
Response time—
📄 Sources
7▼
1
A novel dual histone mark reader ZCWPW2 regulates meiotic recombination through lactylation and transcriptional regulation in humans and mice.
PMID: 41574437
Nucleic Acids Res · 2026
1.00
2
Associations of genetic variants contributing to gut microbiota composition in diabetic nephropathy.
PMID: 38189041
Front Endocrinol (Lausanne) · 2023
0.86
3
Family-wide Characterization of Histone Binding Abilities of Human CW Domain-containing Proteins.
PMID: 26933034
J Biol Chem · 2016
0.71
4
Molecular karyotyping and gene expression analysis in childhood cancer patients.
PMID: 32577795
J Mol Med (Berl) · 2020
0.57
5
Messenger RNA profile analysis deciphers new Esrrb responsive genes in prostate cancer cells.
PMID: 26627478
BMC Mol Biol · 2015
0.43