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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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HMGN4
high mobility group nucleosomal binding domain 4
Chromosome 6 · 6p22.2
NCBI Gene: 10473Ensembl: ENSG00000182952.6HGNC: HGNC:4989UniProt: O00479
45PubMed Papers
0Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingchromatin bindingchromatin organizationnucleus
✦AI Summary

HMGN4 (high mobility group nucleosomal binding domain 4) is a nucleosome-binding protein encoded by an intronless gene at chromosome 6.3 1 that regulates chr6 organization and gene expression. As a non-histone chr6-associated protein, HMGN4 localizes to the nucleus where it interacts with nucleosomes and histone proteins, particularly Hist1H1A and Hist1H3A 2. HMGN4 alters cellular transcription profiles; elevated expression downregulates tumor suppressors (Atm, Atrx, Brca2) and increases DNA damage markers, thereby potentiating thyroid tumorigenesis 3. HMGN4 also facilitates nuclear translocation of the transcription factor IRX5, promoting de novo fatty acid synthesis and HCC development 4. Clinically, HMGN4 is upregulated across multiple malignancies including thyroid cancer, gastric cancer, and hepatocellular carcinoma (HCC) 35. Elevated HMGN4 expression correlates with poor prognostic outcomes in HCC, including high-grade tumors and shorter overall survival 6, and participates in immune infiltration patterns associated with fibrotic progression to HCC 7. Its involvement in crotonylation-mediated pathways further links HMGN4 to HCC prognosis and drug sensitivity 8, establishing it as a potential diagnostic and therapeutic target.

Sources cited
1
HMGN4 is a nucleosome-binding protein encoded by an intronless gene located at chromosome 6p21.3 that localizes to the nucleus
PMID: 11410162
2
HMGN4 is an epigenetic regulator that interacts with histone proteins and is overexpressed in Down Syndrome brain during early gestation
PMID: 34946949
3
HMGN4 upregulation alters transcription profiles, downregulates tumor suppressors (Atm, Atrx, Brca2), and potentiates thyroid tumorigenesis
PMID: 28186538
4
HMGN4 interacts with transcription factor IRX5, promoting its nuclear translocation and de novo fatty acid synthesis in HCC
PMID: 40208102
5
High HMGN4 expression correlates with high-grade HCC tumors and shorter overall survival
PMID: 30272824
6
HMGN4 is upregulated in gastric cancer tissues and associated with immune infiltration and cell cycle pathway regulation
PMID: 36568211
7
HMGN4 is a core lactylation-related gene involved in immune infiltration and progression from liver fibrosis to hepatocellular carcinoma
PMID: 39257588
8
HMGN4 is identified as one of seven crotonylation-associated prognostic features for hepatocellular carcinoma risk stratification
PMID: 39428564
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
H2BK1Shared pathway100%H2BW2Shared pathway100%ZCWPW2Shared pathway100%MSL3BShared pathway100%CDYL2Shared pathway100%ZNF618Shared pathway100%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
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HMGN4H2BK1H2BW2ZCWPW2MSL3BCDYL2ZNF618
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt O00479
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.72LoF Tolerant
pLIⓘ
0.41Tolerant
Observed/Expected LoF0.00 [0.00–1.72]
RankingsWhere HMGN4 stands among ~20K protein-coding genes
  • #9,461of 20,598
    Most Researched45
  • #16,202of 17,882
    Most Constrained (LOEUF)1.72
Genes detectedHMGN4
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Lactylation signature identifies liver fibrosis phenotypes and traces fibrotic progression to hepatocellular carcinoma.
PMID: 39257588
Front Immunol · 2024
1.00
2
Elevated HMGN4 expression potentiates thyroid tumorigenesis.
PMID: 28186538
Carcinogenesis · 2017
0.90
3
Spatial and Temporal Expression of High-Mobility-Group Nucleosome-Binding (HMGN) Genes in Brain Areas Associated with Cognition in Individuals with Down Syndrome.
PMID: 34946949
Genes (Basel) · 2021
0.80
4
Integrative transcriptome analysis identifies a crotonylation gene signature for predicting prognosis and drug sensitivity in hepatocellular carcinoma.
PMID: 39428564
J Cell Mol Med · 2024
0.70
5
Expression, tumor immune infiltration, and prognostic impact of HMGs in gastric cancer.
PMID: 36568211
Front Oncol · 2022
0.60