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25 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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CHTOP
chromatin target of PRMT1
Chromosome 1 · 1q21.3
NCBI Gene: 26097Ensembl: ENSG00000160679.14HGNC: HGNC:24511UniProt: A0A087X1B7
156PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription FactorTransporter
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
RNA bindingprotein bindingmethyl-CpG bindingchromatin remodelingneurodegenerative diseaseneutropeniachondrocalcinosis 2Congenital alveolar capillary dysplasia
✦AI Summary

CHTOP (chr1 target of PRMT1) is a versatile nuclear protein that serves dual roles in transcriptional regulation and mRNA processing. As a component of the TREX complex, CHTOP is essential for mRNA nuclear export by coupling transcription, splicing, and export processes 1. The protein functions through arginine methylation by PRMT1, which regulates post-transcriptional intron retention and splicing kinetics 2. CHTOP activates transcription of specific gene groups, including estrogen-inducible genes in breast cancer and genes involved in glioblastomagenesis, while also repressing fetal γ-globin expression 3. Its expression is strictly autoregulated through intron retention and nonsense-mediated mRNA decay mechanisms 3. Clinically, CHTOP shows significant disease relevance across multiple cancer types. High CHTOP expression correlates with poor disease-free survival in ovarian cancer patients and promotes malignant behaviors including invasion, chemoresistance, and stemness 4. The protein contributes to cisplatin resistance in ovarian cancer through the circHIPK2/miR-338-3p/CHTOP pathway 5. Additionally, CHTOP has emerged as a potential biomarker for islet cell death, with circulating unmethylated CHTOP DNA fragments showing promise for detecting β-cell damage in diabetes 6.

Sources cited
1
CHTOP is a component of the TREX complex essential for mRNA nuclear export
PMID: 27189710
2
CHTOP functions through PRMT1-mediated arginine methylation to regulate splicing and intron retention
PMID: 34984976
3
CHTOP activates transcription of specific gene groups and is autoregulated through intron retention
PMID: 29683372
4
High CHTOP expression correlates with poor survival and promotes malignant behaviors in ovarian cancer
PMID: 30910850
5
CHTOP contributes to cisplatin resistance through the circHIPK2/miR-338-3p/CHTOP pathway
PMID: 34012271
6
Circulating unmethylated CHTOP DNA fragments serve as biomarkers for islet cell death in diabetes
PMID: 32736653
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.48Moderate
neutropeniaOpen Targets
0.10Weak
chondrocalcinosis 2Open Targets
0.05Suggestive
Congenital alveolar capillary dysplasiaOpen Targets
0.05Suggestive
3C syndromeOpen Targets
0.04Suggestive
8q24.3 microdeletion syndromeOpen Targets
0.04Suggestive
22q11.2 deletion syndromeOpen Targets
0.04Suggestive
ovarian cancerOpen Targets
0.04Suggestive
Pancreatic hypoplasia - diabetes - congenital heart diseaseOpen Targets
0.04Suggestive
pancreatic hypoplasia-diabetes-congenital heart disease syndromeOpen Targets
0.04Suggestive
Peters plus syndromeOpen Targets
0.04Suggestive
alveolar capillary dysplasia with misalignment of pulmonary veinsOpen Targets
0.04Suggestive
Fanconi anemiaOpen Targets
0.04Suggestive
1p36 deletion syndromeOpen Targets
0.04Suggestive
Ehlers-Danlos syndrome, classic-like, 2Open Targets
0.04Suggestive
Williams syndromeOpen Targets
0.04Suggestive
Noonan syndromeOpen Targets
0.04Suggestive
Aneurysm - osteoarthritis syndromeOpen Targets
0.04Suggestive
aneurysm-osteoarthritis syndromeOpen Targets
0.04Suggestive
Turner syndromeOpen Targets
0.04Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
HNRNPA1Protein interaction100%SARNPProtein interaction99%HNRNPCProtein interaction98%NXF1Protein interaction98%DDX39BProtein interaction96%THOC5Protein interaction96%
Tissue Expression6 tissues
Bone Marrow
100%
Heart
78%
Ovary
73%
Brain
60%
Lung
60%
Liver
56%
Gene Interaction Network
Click a node to explore
CHTOPHNRNPA1SARNPHNRNPCNXF1DDX39BTHOC5
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q9Y3Y2
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.77LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.52 [0.36–0.77]
RankingsWhere CHTOP stands among ~20K protein-coding genes
  • #2,880of 20,598
    Most Researched156 · top quartile
  • #6,207of 17,882
    Most Constrained (LOEUF)0.77
Genes detectedCHTOP
Sources retrieved25 papers
Response time—
📄 Sources
25▼
1
Anchored multiplex PCR for targeted next-generation sequencing.
PMID: 25384085
Nat Med · 2014
1.00
2
Modulating the expression of Chtop, a versatile regulator of gene-specific transcription and mRNA export.
PMID: 29683372
RNA Biol · 2018
0.90
3
Type I and II PRMTs inversely regulate post-transcriptional intron detention through Sm and CHTOP methylation.
PMID: 34984976
Elife · 2022
0.80
4
Interactions between KSHV ORF57 and the novel human TREX proteins, CHTOP and CIP29.
PMID: 27189710
J Gen Virol · 2016
0.70
5
Chtop is a component of the dynamic TREX mRNA export complex.
PMID: 23299939
EMBO J · 2013
0.68