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GeneE
3 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
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DYNC2I2
dynein 2 intermediate chain 2
Chromosome 9 Β· 9q34.11
NCBI Gene: 89891Ensembl: ENSG00000119333.13HGNC: HGNC:28296UniProt: Q96EX3
50PubMed Papers
21Diseases
0Drugs
51Pathogenic Variants
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingdynein light chain bindingintraciliary retrograde transportcilium assemblyShort rib-polydactyly syndrome, Verma-Naumoff typeJeune syndromeasphyxiating thoracic dystrophy 3short rib-polydactyly syndrome, Majewski type
✦AI Summary

DYNC2I2 (dynein 2 intermediate chain 2) is a critical component of the dynein-2 motor complex required for primary cilium function and intraciliary transport. As a dynein-2 intermediate chain, DYNC2I2 maintains cilia assembly and enables retrograde transport within the cilium 1. The protein localizes to multiple ciliary structures including the axoneme, ciliary basal body, and transition zone, where it interacts with dynein heavy chains and light chains to form functional motor complexes 1. Mutations in DYNC2I2 disrupt dynein-2 assembly and impair multiple ciliary processes, including axoneme extension, intraflagellar transport complex localization, transition zone integrity, and Hedgehog signaling 1. These functional deficits result in ciliopathies characterized by skeletal dysplasia. DYNC2I2 mutations are specifically associated with short-rib thoracic dysplasia and related conditions (Jeune syndrome, short-rib polydactyly syndrome, asphyxiating thoracic dysplasia), where diverse genotypes produce variable phenotypes complicating clinical diagnosis 1. Recently, DYNC2I2 was identified as a prognostic biomarker in cervical cancer 2, though the mechanistic basis for this association requires further investigation. Whole exome sequencing has proven effective for diagnosing DYNC2I2-associated skeletal dysplasias prenatally 3.

Sources cited
1
DYNC2I2 (WDR34) is a dynein-2 intermediate chain required for ciliary function; mutations impair dynein-2 assembly, axoneme extension, IFT complex localization, transition zone integrity, and Hedgehog signaling; associated with Jeune syndrome, short-rib polydactyly syndrome, and asphyxiating thoracic dysplasia
PMID: 36268591
2
DYNC2I2 identified as a prognostic biomarker for cervical squamous cell carcinoma survival prediction
PMID: 35782114
3
DYNC2I2 mutations (c.1270C>T) cause fetal skeletal dysplasia and can be diagnosed via whole exome sequencing
PMID: 40947414
⚠Limited data available β€” This gene has 3 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜21
Short rib-polydactyly syndrome, Verma-Naumoff typeOpen Targets
0.79Strong
Jeune syndromeOpen Targets
0.58Moderate
asphyxiating thoracic dystrophy 3Open Targets
0.42Moderate
short rib-polydactyly syndrome, Majewski typeOpen Targets
0.42Moderate
genetic disorderOpen Targets
0.19Weak
Retinal dystrophyOpen Targets
0.17Weak
breast cancerOpen Targets
0.08Suggestive
intracranial hemorrhageOpen Targets
0.05Suggestive
gliomaOpen Targets
0.04Suggestive
ulnar hemimeliaOpen Targets
0.04Suggestive
Meckel syndrome, type 2Open Targets
0.04Suggestive
Acropectorovertebral dysplasiaOpen Targets
0.03Suggestive
Humero-radial synostosisOpen Targets
0.03Suggestive
hepatocellular carcinomaOpen Targets
0.03Suggestive
congenital vertical talusOpen Targets
0.03Suggestive
craniorachischisisOpen Targets
0.03Suggestive
Meckel syndrome, type 5Open Targets
0.03Suggestive
spondyloepimetaphyseal dysplasia with multiple dislocationsOpen Targets
0.03Suggestive
tibial hemimeliaOpen Targets
0.03Suggestive
Meckel syndrome, type 4Open Targets
0.03Suggestive
Short-rib thoracic dysplasia 11 with or without polydactylyUniProt
Pathogenic Variants51
NM_052844.4(DYNC2I2):c.93_108del (p.Pro32fs)Pathogenic
Short-rib thoracic dysplasia 11 with or without polydactyly
β˜…β˜…β˜†β˜†2025β†’ Residue 32
NM_052844.4(DYNC2I2):c.1372+1G>APathogenic
Short-rib thoracic dysplasia 11 with or without polydactyly|not provided|Melanoma|Hepatocellular carcinoma
β˜…β˜…β˜†β˜†2025
NM_052844.4(DYNC2I2):c.1103_1104del (p.Glu368fs)Pathogenic
Short-rib thoracic dysplasia 11 with or without polydactyly
β˜…β˜…β˜†β˜†2025β†’ Residue 368
NM_052844.4(DYNC2I2):c.629del (p.Pro210fs)Pathogenic
Short-rib thoracic dysplasia 11 with or without polydactyly
β˜…β˜…β˜†β˜†2025β†’ Residue 210
NM_052844.4(DYNC2I2):c.544C>T (p.Arg182Trp)Pathogenic
Jeune thoracic dystrophy|Short-rib thoracic dysplasia 11 with or without polydactyly|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 182
NM_052844.4(DYNC2I2):c.361C>T (p.Arg121Ter)Pathogenic
Short-rib thoracic dysplasia 11 with or without polydactyly
β˜…β˜…β˜†β˜†2025β†’ Residue 121
NM_052844.4(DYNC2I2):c.1339C>T (p.Arg447Trp)Pathogenic
Short-rib thoracic dysplasia 11 with or without polydactyly|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 447
NM_052844.4(DYNC2I2):c.1312_1313del (p.Leu438fs)Pathogenic
Short-rib thoracic dysplasia 11 with or without polydactyly
β˜…β˜…β˜†β˜†2023β†’ Residue 438
NM_052844.4(DYNC2I2):c.1315_1318del (p.Phe439fs)Pathogenic
Short-rib thoracic dysplasia 11 with or without polydactyly
β˜…β˜…β˜†β˜†2023β†’ Residue 439
NM_052844.4(DYNC2I2):c.1428del (p.Lys477fs)Pathogenic
Short-rib thoracic dysplasia 11 with or without polydactyly
β˜…β˜†β˜†β˜†2025β†’ Residue 477
NM_052844.4(DYNC2I2):c.149C>A (p.Ser50Ter)Pathogenic
Short-rib thoracic dysplasia 11 with or without polydactyly
β˜…β˜†β˜†β˜†2025β†’ Residue 50
NM_052844.4(DYNC2I2):c.1509_1515del (p.Gln504_Gly505insTer)Pathogenic
Short-rib thoracic dysplasia 11 with or without polydactyly
β˜…β˜†β˜†β˜†2025β†’ Residue 504
NM_052844.4(DYNC2I2):c.545+1G>TLikely pathogenic
Short-rib thoracic dysplasia 11 with or without polydactyly
β˜…β˜†β˜†β˜†2025
NM_052844.4(DYNC2I2):c.1418_1419del (p.Thr473fs)Likely pathogenic
Short-rib thoracic dysplasia 11 with or without polydactyly
β˜…β˜†β˜†β˜†2025β†’ Residue 473
NM_052844.4(DYNC2I2):c.1206del (p.Phe403fs)Pathogenic
Short-rib thoracic dysplasia 11 with or without polydactyly
β˜…β˜†β˜†β˜†2025β†’ Residue 403
NM_052844.4(DYNC2I2):c.263_303dup (p.Gln102fs)Pathogenic
Short-rib thoracic dysplasia 11 with or without polydactyly
β˜…β˜†β˜†β˜†2025β†’ Residue 102
NM_052844.4(DYNC2I2):c.1193_1194del (p.Val398fs)Pathogenic
Short-rib thoracic dysplasia 11 with or without polydactyly
β˜…β˜†β˜†β˜†2025β†’ Residue 398
NM_052844.4(DYNC2I2):c.1280_1283del (p.Pro427fs)Pathogenic
Short-rib thoracic dysplasia 11 with or without polydactyly
β˜…β˜†β˜†β˜†2025β†’ Residue 427
NM_052844.4(DYNC2I2):c.981+1G>ALikely pathogenic
Short-rib thoracic dysplasia 11 with or without polydactyly
β˜…β˜†β˜†β˜†2025
NM_052844.4(DYNC2I2):c.82_83insCA (p.Ser28fs)Likely pathogenic
Short-rib thoracic dysplasia 11 with or without polydactyly
β˜…β˜†β˜†β˜†2025β†’ Residue 28
View on ClinVar β†—
Related Genes
IFT140Protein interaction100%DYNLL2Protein interaction97%DYNC1LI1Protein interaction93%DYNLT3Protein interaction90%DYNC2LI1Protein interaction90%TPRProtein interaction90%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
100%
Liver
58%
Lung
35%
Heart
34%
Ovary
31%
Gene Interaction Network
Click a node to explore
DYNC2I2IFT140DYNLL2DYNC1LI1DYNLT3DYNC2LI1TPR
PROTEIN STRUCTURE
Preparing viewer…
PDB6SC2 Β· 3.90 Γ… Β· EM
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
1.04LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.80 [0.62–1.04]
RankingsWhere DYNC2I2 stands among ~20K protein-coding genes
  • #8,798of 20,598
    Most Researched50
  • #1,313of 5,498
    Most Pathogenic Variants51 Β· top quartile
  • #10,295of 17,882
    Most Constrained (LOEUF)1.04
Genes detectedDYNC2I2
Sources retrieved3 papers
Response timeβ€”
πŸ“„ Sources
3
1
Disease-associated mutations in WDR34 lead to diverse impacts on the assembly and function of dynein-2.
PMID: 36268591
J Cell Sci Β· 2023
1.00
2
Bioinformatics Analysis Highlights Five Differentially Expressed Genes as Prognostic Biomarkers of Cervical Cancer and Novel Option for Anticancer Treatment.
PMID: 35782114
Front Cell Infect Microbiol Β· 2022
0.67
3
[Genetic analysis of 74 fetuses terminated for skeletal dysplasia and evaluation of diagnostic performance of whole exome sequencing].
PMID: 40947414
Zhonghua Yi Xue Yi Chuan Xue Za Zhi Β· 2025
0.33