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25 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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EBNA1BP2
EBNA1 binding protein 2
Chromosome 1 · 1p34.2
NCBI Gene: 10969Ensembl: ENSG00000117395.13HGNC: HGNC:15531UniProt: H7C2Q8
183PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
RNA bindingprotein bindingnucleoluschromosomeneurodegenerative diseaseneoplasmhypertensioninfection
✦AI Summary

EBNA1BP2 (EBNA1 binding protein 2) is a nucleolar protein that plays an essential role in ribosome biogenesis, specifically required for processing of the 27S pre-rRNA [UniProt]. The protein functions as a dynamic scaffold component in the nucleolus, facilitating ribosomal large subunit biogenesis 1. EBNA1BP2 localizes to the nucleolus and demonstrates dynamic behavior through fluorescence recovery after photobleaching analysis, suggesting its active involvement in ribosome assembly processes 1. The protein has been identified as commonly overexpressed across multiple solid tumor types, including carcinomas of the prostate, breast, lung, ovary, colon, pancreas, stomach, bladder, liver, and kidney 2. Clinically, EBNA1BP2 expression correlates with disease susceptibility and progression in various pathological contexts. It has been identified as a hub susceptibility gene for COVID-19 in lung adenocarcinoma patients, with expression levels significantly correlated with immune cell infiltration 3. Additionally, EBNA1BP2 appears as a downregulated gene in sepsis-induced myopathy, suggesting involvement in muscle dysfunction pathways 4. The protein's association with metabolic processes and its altered expression in gastritis patients further indicates broader roles in cellular homeostasis 5.

Sources cited
1
EBNA1BP2 localizes to the nucleolus and functions as a dynamic scaffold protein for ribosome biogenesis
PMID: 19170763
2
EBNA1BP2 is commonly overexpressed across multiple solid tumor types
PMID: 15720800
3
EBNA1BP2 is a hub susceptibility gene for COVID-19 in lung adenocarcinoma patients
PMID: 34840672
4
EBNA1BP2 is downregulated in sepsis-induced myopathy
PMID: 39438952
5
EBNA1BP2 is involved in protein metabolism processes in gastritis patients
PMID: 23185754
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.24Weak
neoplasmOpen Targets
0.11Weak
hypertensionOpen Targets
0.10Weak
infectionOpen Targets
0.09Suggestive
experimental autoimmune encephalomyelitisOpen Targets
0.08Suggestive
small cell lung carcinomaOpen Targets
0.08Suggestive
squamous cell carcinomaOpen Targets
0.08Suggestive
triple-negative breast cancerOpen Targets
0.08Suggestive
adenocarcinomaOpen Targets
0.08Suggestive
cancerOpen Targets
0.07Suggestive
adenoid cystic carcinomaOpen Targets
0.07Suggestive
squamous cell lung carcinomaOpen Targets
0.06Suggestive
hemoglobin D diseaseOpen Targets
0.05Suggestive
Townes-Brocks syndromeOpen Targets
0.05Suggestive
dominant beta-thalassemiaOpen Targets
0.05Suggestive
hemoglobin H diseaseOpen Targets
0.05Suggestive
rheumatoid arthritisOpen Targets
0.05Suggestive
Hemoglobin C - beta-thalassemiaOpen Targets
0.04Suggestive
hemoglobin C-beta-thalassemia syndromeOpen Targets
0.04Suggestive
diabetes mellitusOpen Targets
0.04Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
NOP56Protein interaction100%NOP58Protein interaction100%MDN1Protein interaction100%NHP2Protein interaction100%KRR1Protein interaction99%UTP11Protein interaction99%
Tissue Expression6 tissues
Liver
100%
Brain
37%
Bone Marrow
29%
Heart
26%
Ovary
23%
Lung
22%
Gene Interaction Network
Click a node to explore
EBNA1BP2NOP56NOP58MDN1NHP2KRR1UTP11
PROTEIN STRUCTURE
Preparing viewer…
PDB8FKV · 2.47 Å · EM
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.01LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.76 [0.58–1.01]
RankingsWhere EBNA1BP2 stands among ~20K protein-coding genes
  • #2,364of 20,598
    Most Researched183 · top quartile
  • #9,758of 17,882
    Most Constrained (LOEUF)1.01
Genes detectedEBNA1BP2
Sources retrieved25 papers
Response time—
📄 Sources
25▼
1
Proteomic and targeted analytical identification of BXDC1 and EBNA1BP2 as dynamic scaffold proteins in the nucleolus.
PMID: 19170763
Genes Cells · 2009
1.00
2
Mechanism of Monocarboxylate Transporter 1 and Its Methylation in Nasopharyngeal Carcinoma Pathogenesis.
PMID: 40452617
Cancer Biother Radiopharm · 2025
0.90
3
Identification of the susceptibility genes for COVID-19 in lung adenocarcinoma with global data and biological computation methods.
PMID: 34840672
Comput Struct Biotechnol J · 2021
0.80
4
Bone dynamics and inflammation: lessons from rare diseases.
PMID: 31999934
Immunol Med · 2020
0.70
5
EBNA1BP2 (EBP2) promotes the progression of hepatocellular carcinoma through upregulating the expression of MCM8 and HMGB1.
PMID: 41935051
Cell Death Dis · 2026
0.60