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GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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GCA
grancalcin
Chromosome 2 · 2q24.2
NCBI Gene: 25801Ensembl: ENSG00000115271.11HGNC: HGNC:15990UniProt: B7Z322
41PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
calcium ion bindingcytosolprotein heterodimerization activityextracellular exosomeintelligenceplacenta praeviapsoriasispsoriasis vulgaris
✦AI Summary

Grancalcin (GCA) is a calcium-binding protein that functions as a secreted pro-senescent factor with significant pathological implications in aging-related diseases. GCA is secreted by macrophages and bone marrow-derived immune cells, where it promotes cellular senescence through binding to the plexin-B2 receptor and activating Arg2-mediated mitochondrial dysfunction 1. In skeletal tissue, macrophage-secreted GCA induces skeletal stem/progenitor cell senescence, impairing fracture healing in aged individuals 1. In Alzheimer's disease, bone marrow-derived GCA+ immune cells preferentially invade the hippocampus and cortex in a CCR10-dependent manner, where GCA competitively binds to LRP1 in microglia, inhibiting phagocytosis and clearance of amyloid-β plaques 2. Higher circulating GCA levels in Alzheimer's patients negatively correlate with cognitive function 2. The protein's pathological effects can be therapeutically targeted, as GCA-neutralizing antibodies enhance fracture healing in aged mice and improve cognitive function in Alzheimer's disease models 12. These findings establish GCA as a key mediator of age-related tissue dysfunction through its role in promoting cellular senescence and impairing regenerative processes.

Sources cited
1
GCA is secreted by macrophages, binds to plexin-B2 receptor, activates Arg2-mediated mitochondrial dysfunction, and induces skeletal stem cell senescence
PMID: 38267422
2
GCA+ immune cells invade brain tissue in Alzheimer's disease, GCA binds to LRP1 in microglia inhibiting amyloid-β clearance, and circulating GCA levels negatively correlate with cognitive function
PMID: 37949676
3
GCA-neutralizing antibodies enhance fracture healing in aged mice
PMID: 38267422
4
GCA-neutralizing antibody treatment improves cognitive function in Alzheimer's disease models
PMID: 37949676
⚠Limited data available — This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ20
intelligenceOpen Targets
0.34Weak
placenta praeviaOpen Targets
0.28Weak
psoriasisOpen Targets
0.24Weak
psoriasis vulgarisOpen Targets
0.20Weak
type 2 diabetes mellitusOpen Targets
0.16Weak
hypertrophic cardiomyopathyOpen Targets
0.08Suggestive
spondylolisthesisOpen Targets
0.08Suggestive
malunion fractureOpen Targets
0.08Suggestive
cervical carcinomaOpen Targets
0.08Suggestive
Alzheimer diseaseOpen Targets
0.08Suggestive
gestational diabetesOpen Targets
0.07Suggestive
systemic lupus erythematosusOpen Targets
0.07Suggestive
cancerOpen Targets
0.06Suggestive
Pallister-Hall syndromeOpen Targets
0.05Suggestive
psoriatic arthritisOpen Targets
0.05Suggestive
diabetes mellitusOpen Targets
0.04Suggestive
placental retentionOpen Targets
0.04Suggestive
obesityOpen Targets
0.03Suggestive
non-alcoholic steatohepatitisOpen Targets
0.03Suggestive
temporal arteritisOpen Targets
0.03Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
KCNH7Protein interaction89%LCP1Protein interaction84%BET1LShared pathway50%SEC22AShared pathway50%RABIFShared pathway33%OTOFShared pathway25%
Tissue Expression6 tissues
Bone Marrow
100%
Lung
12%
Brain
10%
Liver
4%
Heart
4%
Ovary
3%
Gene Interaction Network
Click a node to explore
GCAKCNH7LCP1BET1LSEC22ARABIFOTOF
PROTEIN STRUCTURE
Preparing viewer…
PDB1K94 · 1.70 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.85LoF Tolerant
pLIⓘ
0.04Tolerant
Observed/Expected LoF0.97 [0.42–1.85]
RankingsWhere GCA stands among ~20K protein-coding genes
  • #10,010of 20,598
    Most Researched41
  • #16,821of 17,882
    Most Constrained (LOEUF)1.85
Genes detectedGCA
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
The Spectrum of Neurological Manifestations of Varicella-Zoster Virus Reactivation.
PMID: 37632006
Viruses · 2023
1.00
2
Giant Cell Arteritis (GCA): Pathogenesis, Clinical Aspects and Treatment Approaches.
PMID: 30827250
Curr Rheumatol Rev · 2019
0.90
3
Age-related secretion of grancalcin by macrophages induces skeletal stem/progenitor cell senescence during fracture healing.
PMID: 38267422
Bone Res · 2024
0.80
4
Giant Cell Arteritis.
PMID: 30952412
Neurol Clin · 2019
0.70
5
Bone Marrow-Derived GCA
PMID: 37949676
Adv Sci (Weinh) · 2023
0.60