HomeAboutRankingsData Sources
Β© 2026 GeneE
🧬
GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
GPC4
glypican 4
Chromosome X Β· Xq26.2
NCBI Gene: 2239Ensembl: ENSG00000076716.10HGNC: HGNC:4452UniProt: O75487
82PubMed Papers
21Diseases
0Drugs
16Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
extracellular exosomeexternal side of plasma membraneWnt signaling pathwayprotein bindingKeipert syndromeCOVID-19dengue diseaseneurodegenerative disease
✦AI Summary

GPC4 (glypican 4) is a cell surface heparan sulfate proteoglycan that functions as a GPI-anchored protein involved in multiple physiological and pathological processes 1. Primary function: GPC4 acts as a coreceptor in developmental signaling pathways, with roles in kidney tubule and central nervous system development 2. Mechanism: GPC4 participates in Wnt signaling and can bind APOE4 to modulate receptor trafficking 3. In colorectal cancer, CD36-mediated ubiquitination of GPC4 suppresses Ξ²-catenin/c-myc signaling and inhibits glycolytic gene expression 4. Disease relevance: GPC4 variants cause Keipert syndrome, characterized by craniofacial and digital abnormalities resulting from loss-of-function mutations that impair protein stability and proper glycosylation 1. In Alzheimer's disease pathology, AΞ²-induced microglial GPC4 upregulation exacerbates tau hyperphosphorylation and neuronal tau toxicity, particularly in APOE4 carriers 3 5. Clinical significance: GPC4 represents a molecular link between amyloid and tau pathology in neurodegeneration. In inflammatory uveitis, FTO-mediated m6A modification of GPC4 regulates microglial inflammation through TLR4/NF-ΞΊB signaling, suggesting therapeutic targeting potential 6. The tight clustering of GPC3 and GPC4 on Xq26 may explain phenotypic variability in growth dysregulation syndromes 2.

Sources cited
1
CD36-GPC4 interaction promotes proteasome-dependent ubiquitination of GPC4 and inhibits Ξ²-catenin/c-myc signaling in colorectal cancer
PMID: 31484922
2
AΞ²-associated microglia upregulate GPC4; glial GPC4 exacerbates neurodegeneration and enhances tau pathology through APOE-dependent mechanisms
PMID: 40060520
3
Astrocyte-secreted GPC4 binds preferentially to APOE4 and drives tau hyperphosphorylation via LRP1 surface trafficking
PMID: 35969759
4
FTO regulates GPC4 expression through m6A modification to control microglial inflammation via TLR4/NF-ΞΊB signaling in uveitis
PMID: 37492748
5
Pathogenic variants in GPC4 cause Keipert syndrome through loss-of-function mutations affecting protein stability and GPI anchor sites
PMID: 30982611
6
GPC4 gene is tightly clustered with GPC3 on Xq26 with nearly ubiquitous expression; deletions can affect both genes in SGBS
PMID: 9787072
Disease Associationsβ“˜21
Keipert syndromeOpen Targets
0.74Strong
COVID-19Open Targets
0.54Moderate
dengue diseaseOpen Targets
0.46Moderate
neurodegenerative diseaseOpen Targets
0.37Weak
Distal shortening of limbsOpen Targets
0.27Weak
craniosynostosisOpen Targets
0.26Weak
genetic disorderOpen Targets
0.19Weak
Blackfan-Diamond anemiaOpen Targets
0.11Weak
polycystic ovary syndromeOpen Targets
0.09Suggestive
lung adenocarcinomaOpen Targets
0.08Suggestive
cancerOpen Targets
0.08Suggestive
Parkinson diseaseOpen Targets
0.08Suggestive
glioblastomaOpen Targets
0.07Suggestive
Alzheimer diseaseOpen Targets
0.07Suggestive
inosine triphosphatase deficiencyOpen Targets
0.07Suggestive
alpha thalassemia-intellectual disability syndrome type 1Open Targets
0.07Suggestive
Alpha-thalassemia - intellectual disability syndrome linked to chromosome 16Open Targets
0.07Suggestive
delta-beta-thalassemiaOpen Targets
0.07Suggestive
hemolytic anemia due to adenylate kinase deficiencyOpen Targets
0.06Suggestive
hemoglobin E-beta-thalassemia syndromeOpen Targets
0.06Suggestive
Keipert syndromeUniProt
Pathogenic Variants16
NM_001448.3(GPC4):c.1051C>T (p.Arg351Ter)Likely pathogenic
not provided|Keipert syndrome
β˜…β˜†β˜†β˜†2024β†’ Residue 351
NM_001448.3(GPC4):c.1512T>G (p.Tyr504Ter)Likely pathogenic
Keipert syndrome
β˜…β˜†β˜†β˜†2024β†’ Residue 504
NM_001448.3(GPC4):c.654_656delinsTTAC (p.Arg219fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2022β†’ Residue 219
NM_001448.3(GPC4):c.1183C>T (p.Gln395Ter)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2021β†’ Residue 395
NM_001448.3(GPC4):c.1486G>T (p.Glu496Ter)Pathogenic
Keipert syndrome
β˜…β˜†β˜†β˜†2019β†’ Residue 496
NM_001448.3(GPC4):c.1516C>T (p.Gln506Ter)Pathogenic
Keipert syndrome
β˜…β˜†β˜†β˜†2019β†’ Residue 506
NM_001448.3(GPC4):c.1235G>A (p.Arg412Lys)Likely pathogenic
Distal shortening of limbs
β˜…β˜†β˜†β˜†2017β†’ Residue 412
NM_001448.3(GPC4):c.1506_1507del (p.Cys502_Glu503delinsTer)Likely pathogenic
Keipert syndrome
β˜…β˜†β˜†β˜†β†’ Residue 502
NM_001448.3(GPC4):c.1513C>T (p.Gln505Ter)Likely pathogenic
Keipert syndrome
β˜†β˜†β˜†β˜†2026β†’ Residue 505
NM_001448.3(GPC4):c.1032del (p.Lys345fs)Likely pathogenic
GPC4-related disorder
β˜†β˜†β˜†β˜†2024β†’ Residue 345
NM_001448.3(GPC4):c.1496dup (p.Ser500fs)Likely pathogenic
Keipert syndrome
β˜†β˜†β˜†β˜†2023β†’ Residue 500
NM_001448.3(GPC4):c.455del (p.Val152fs)Likely pathogenic
Craniosynostosis syndrome
β˜†β˜†β˜†β˜†2019β†’ Residue 152
NM_001448.3(GPC4):c.316del (p.Asp106fs)Pathogenic
Keipert syndrome
β˜†β˜†β˜†β˜†2019β†’ Residue 106
NM_001448.3(GPC4):c.701dup (p.Val235fs)Pathogenic
Keipert syndrome
β˜†β˜†β˜†β˜†2019β†’ Residue 235
NM_001448.3(GPC4):c.1518_1521dup (p.Pro508fs)Pathogenic
Keipert syndrome
β˜†β˜†β˜†β˜†2019β†’ Residue 508
NM_001448.3(GPC4):c.742del (p.Leu248fs)Pathogenic
Keipert syndrome
β˜†β˜†β˜†β˜†2019β†’ Residue 248
View on ClinVar β†—
Related Genes
FZD1Protein interaction100%FZD2Protein interaction100%FZD8Protein interaction99%GPC3Protein interaction99%FZD5Protein interaction97%FZD4Protein interaction97%
Tissue Expression6 tissues
Lung
100%
Ovary
79%
Heart
46%
Brain
40%
Liver
11%
Bone Marrow
3%
Gene Interaction Network
Click a node to explore
GPC4FZD1FZD2FZD8GPC3FZD5FZD4
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt O75487
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.48Moderately Constrained
pLIβ“˜
0.99Intolerant
Observed/Expected LoF0.29 [0.18–0.48]
RankingsWhere GPC4 stands among ~20K protein-coding genes
  • #5,794of 20,598
    Most Researched82
  • #2,404of 5,498
    Most Pathogenic Variants16
  • #2,848of 17,882
    Most Constrained (LOEUF)0.48 Β· top quartile
Genes detectedGPC4
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
CD36 inhibits Ξ²-catenin/c-myc-mediated glycolysis through ubiquitination of GPC4 to repress colorectal tumorigenesis.
PMID: 31484922
Nat Commun Β· 2019
1.00
2
Ξ²-Amyloid Induces Microglial Expression of GPC4 and APOE Leading to Increased Neuronal Tau Pathology and Toxicity.
PMID: 40060520
bioRxiv Β· 2025
0.90
3
Astrocyte-secreted glypican-4 drives APOE4-dependent tau hyperphosphorylation.
PMID: 35969759
Proc Natl Acad Sci U S A Β· 2022
0.80
4
FTO-mediated m6A modification alleviates autoimmune uveitis by regulating microglia phenotypes via the GPC4/TLR4/NF-ΞΊB signaling axis.
PMID: 37492748
Genes Dis Β· 2023
0.70
5
GPC4, the gene for human K-glypican, flanks GPC3 on xq26: deletion of the GPC3-GPC4 gene cluster in one family with Simpson-Golabi-Behmel syndrome.
PMID: 9787072
Genomics Β· 1998
0.60