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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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GTF3A
general transcription factor IIIA
Chromosome 13 · 13q12.2
NCBI Gene: 2971Ensembl: ENSG00000122034.17HGNC: HGNC:4662UniProt: Q92664
30PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
nucleoplasm5S rRNA bindingribosomal large subunit biogenesisnucleusneurodegenerative diseaseAbnormality of the skeletal systemplacenta praeviatype 2 diabetes mellitus
✦AI Summary

GTF3A (General Transcription Factor IIIA) is a Cys2-His2 zinc-finger transcription factor that functions primarily in ribosomal RNA biogenesis and innate immunity. GTF3A binds the internal control region of 5S ribosomal RNA genes and is required for RNA polymerase III-dependent transcription of these genes 1. Beyond its classical rRNA function, GTF3A exhibits broader regulatory roles: it binds directly to RNA and regulates post-transcriptional processes including pre-mRNA splicing and polyadenylation 2. Notably, GTF3A controls transcription of RNA5SP141, an endogenous RIG-I agonist critical for antiviral innate immunity; loss-of-function GTF3A mutations impair anti-HSV-1 responses and predispose to herpes simplex encephalitis 3. In cancer biology, GTF3A is frequently upregulated in colorectal cancer tissues and promotes tumor progression by upregulating cystatin A and epithelial-mesenchymal transition markers 4. High GTF3A expression correlates with poor prognosis and is part of a prognostic 3-gene signature in colorectal cancer 56. GTF3A is located on chromosome 13.3-q13.1 1 and represents both a potential therapeutic target and prognostic biomarker for cancer management.

Sources cited
1
GTF3A structure contains nine Cys2His2 zinc-finger domains and shares 58% amino acid identity with Xenopus TFIIIA; localized to chromosome 13q12.3-q13.1
PMID: 7789179
2
GTF3A binds RNA directly and regulates post-transcriptional processes including pre-mRNA splicing and polyadenylation
PMID: 39303720
3
GTF3A mutations cause impaired anti-HSV-1 innate immune responses through reduced RNA5SP141 expression and abrogated RIG-I activation
PMID: 36399538
4
GTF3A promotes colorectal cancer progression by upregulating cystatin A and regulating epithelial-mesenchymal transition
PMID: 36310710
5
GTF3A is part of a 3-gene prognostic signature associated with overall survival in colorectal cancer patients
PMID: 39673574
6
High GTF3A expression correlates with poor prognosis in colorectal cancer and is overexpressed in cancer tissues
PMID: 33925358
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.49Moderate
Abnormality of the skeletal systemOpen Targets
0.43Moderate
placenta praeviaOpen Targets
0.31Weak
type 2 diabetes mellitusOpen Targets
0.29Weak
cervical carcinomaOpen Targets
0.29Weak
adolescent idiopathic scoliosisOpen Targets
0.26Weak
ovarian neoplasmOpen Targets
0.22Weak
breast carcinomaOpen Targets
0.22Weak
obesityOpen Targets
0.11Weak
neoplasmOpen Targets
0.10Weak
melanomaOpen Targets
0.08Suggestive
colorectal carcinomaOpen Targets
0.08Suggestive
breast cancerOpen Targets
0.07Suggestive
lung cancerOpen Targets
0.06Suggestive
Alzheimer diseaseOpen Targets
0.04Suggestive
cancerOpen Targets
0.04Suggestive
angiosarcomaOpen Targets
0.03Suggestive
non-small cell lung carcinomaOpen Targets
0.03Suggestive
glioblastoma multiformeOpen Targets
0.03Suggestive
metabolic syndromeOpen Targets
0.03Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
BDP1Protein interaction100%OPTNProtein interaction96%GTF3C3Protein interaction80%BRF1Protein interaction77%GTF3C5Protein interaction77%GTF3C1Protein interaction69%
Tissue Expression6 tissues
Heart
100%
Liver
69%
Bone Marrow
56%
Brain
46%
Lung
42%
Ovary
20%
Gene Interaction Network
Click a node to explore
GTF3ABDP1OPTNGTF3C3BRF1GTF3C5GTF3C1
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q92664
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.89LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.36 [0.85–1.89]
RankingsWhere GTF3A stands among ~20K protein-coding genes
  • #11,934of 20,598
    Most Researched30
  • #17,232of 17,882
    Most Constrained (LOEUF)1.89
Genes detectedGTF3A
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
C2H2-zinc-finger transcription factors bind RNA and function in diverse post-transcriptional regulatory processes.
PMID: 39303720
Mol Cell · 2024
1.00
2
Molecular cloning, characterization, and chromosomal mapping of a novel human gene (GTF3A) that is highly homologous to Xenopus transcription factor IIIA.
PMID: 7789179
Cytogenet Cell Genet · 1995
0.90
3
PMID: 36399538
Sci Immunol · 2022
0.80
4
Transcriptional factor III A promotes colorectal cancer progression by upregulating cystatin A.
PMID: 36310710
World J Gastrointest Oncol · 2022
0.70
5
GTF3A mutations impair antiviral immunity.
PMID: 36477413
Nat Rev Immunol · 2023
0.60