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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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HTR3C
5-hydroxytryptamine receptor 3C
Chromosome 3 · 3q27.1
NCBI Gene: 170572Ensembl: ENSG00000178084.2HGNC: HGNC:24003UniProt: Q8WXA8
22PubMed Papers
20Diseases
14Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Ion ChannelReceptorTransporter
CLINICAL
FDA Approved Target
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
plasma membraneserotonin-gated monoatomic cation channel activityprotein bindingserotonin receptor signaling pathwayschizophreniairritable bowel syndromepost operative nausea and vomitingmajor depressive disorder
✦AI Summary

HTR3C encodes the 5-hydroxytryptamine receptor 3C subunit, which forms serotonin-activated cation-selective ion channels that mediate fast depolarizing responses in neurons. The protein functions as part of heteromeric 5-HT3 receptor complexes localized to the plasma membrane, where it facilitates transmembrane transport of monoatomic cations and participates in synaptic neurotransmission 1. Genetically, HTR3C polymorphisms influence susceptibility to gastrointestinal and neuropsychiatric disorders. The rs6766410 allele A variant associates with decreased cyclic vomiting syndrome risk 2, while the rs489C>A polymorphism correlates with depressive and anxiety symptoms in irritable bowel syndrome patients 3. HTR3C variants have been identified in genome-wide association studies as risk loci for oesophageal adenocarcinoma specifically (rs9823696) 4 and migraine susceptibility 5. Clinically, HTR3C represents a potential biomarker for Alzheimer's disease among five key neurotransmitter receptor genes showing differential expression and diagnostic utility 6. In endometrial carcinoma, elevated HTR3C expression associates with microsatellite-stable tumors and higher-risk disease phenotypes 7. These findings suggest HTR3C dysfunction contributes to disorders involving serotonergic dysregulation and may serve as a therapeutic target for gastrointestinal and neurological conditions.

Sources cited
1
HTR3C is a serotonin 5-HT3 receptor-like gene clustered with HTR3D and HTR3E on chromosome 3q27, widely expressed in multiple tissues including brain
PMID: 12801637
2
HTR3C rs6766410 allele A associates with decreased risk of cyclic vomiting syndrome
PMID: 39888244
3
HTR3C c.489C>A polymorphism correlates with depressive and anxiety symptoms in IBS patients with functional changes in 5-HT3AC variant receptor expression
PMID: 35800179
4
HTR3C locus rs9823696 is a risk variant specifically associated with oesophageal adenocarcinoma development
PMID: 27527254
5
HTR3C is among newly identified genetic loci influencing migraine susceptibility in GWAS analysis
PMID: 41372126
6
HTR3C is identified as a key neurotransmitter receptor gene biomarker for Alzheimer's disease with diagnostic utility and immune cell association
PMID: 38729598
7
HTR3C is upregulated in microsatellite-stable endometrial carcinoma and serves as a component of an immune-related gene signature for EC diagnosis
PMID: 38355782
Disease Associationsⓘ20
schizophreniaOpen Targets
0.59Moderate
irritable bowel syndromeOpen Targets
0.51Moderate
post operative nausea and vomitingOpen Targets
0.49Moderate
major depressive disorderOpen Targets
0.48Moderate
psychosisOpen Targets
0.46Moderate
Nausea and vomitingOpen Targets
0.46Moderate
obesityOpen Targets
0.46Moderate
NauseaOpen Targets
0.43Moderate
neurodegenerative diseaseOpen Targets
0.40Weak
depressive disorderOpen Targets
0.37Weak
DiarrheaOpen Targets
0.37Weak
fibromyalgiaOpen Targets
0.37Weak
gastrointestinal diseaseOpen Targets
0.37Weak
cancerOpen Targets
0.28Weak
Chemotherapy-induced nausea and vomitingOpen Targets
0.28Weak
dyspepsiaOpen Targets
0.27Weak
ConstipationOpen Targets
0.27Weak
VomitingOpen Targets
0.26Weak
gastric cancerOpen Targets
0.26Weak
ileusOpen Targets
0.26Weak
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Drug Targets14
AMISULPRIDEApproved
Serotonin (5-HT) receptor antagonist
Nausea and vomiting
CLOTHIAPINEApproved
Dopamine D4 receptor antagonist
schizophrenia
DEXFENFLURAMINEApproved
Serotonin (5-HT) receptor agonist
obesity
DEXFENFLURAMINE HYDROCHLORIDEUNKNOWN
Serotonin (5-HT) receptor agonist
FACINICLINE HYDROCHLORIDEPhase II
Serotonin 3 (5-HT3) receptor antagonist
schizophrenia
MOSAPRIDEApproved
Serotonin 4 (5-HT4) receptor agonist
gastrointestinal disease
PUMOSETRAGPhase II/III
Serotonin 3 (5-HT3) receptor partial agonist
irritable bowel syndrome
RAMOSETRONApproved
Serotonin 3 (5-HT3) receptor antagonist
Nausea and vomiting
RAMOSETRON HYDROCHLORIDEApproved
Serotonin 3 (5-HT3) receptor antagonist
irritable bowel syndrome
RENZAPRIDEPhase III
Serotonin 4 (5-HT4) receptor agonist
irritable bowel syndrome
TEDATIOXETINEPhase II
Serotonin 2c (5-HT2c) receptor antagonist
major depressive disorder
TROPISETRONApproved
Serotonin 3 (5-HT3) receptor antagonist
Nausea
ZIMELDINEApproved
Serotonin (5-HT) receptor antagonist
major depressive disorder
ZIMELDINE HYDROCHLORIDEUNKNOWN
Serotonin (5-HT) receptor antagonist
Related Genes
HTR3BProtein interaction99%HTR3AProtein interaction93%HTR3DProtein interaction83%HTR3EProtein interaction79%LASP1Shared pathway40%SFXN4Shared pathway33%
Tissue Expression6 tissues
Lung
100%
Bone Marrow
2%
Ovary
2%
Heart
0%
Liver
0%
Brain
0%
Gene Interaction Network
Click a node to explore
HTR3CHTR3BHTR3AHTR3DHTR3ELASP1SFXN4
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q8WXA8
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.17LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.83 [0.60–1.17]
RankingsWhere HTR3C stands among ~20K protein-coding genes
  • #13,675of 20,598
    Most Researched22
  • #197of 1,025
    FDA-Approved Drug Targets8 · top quartile
  • #12,198of 17,882
    Most Constrained (LOEUF)1.17
Genes detectedHTR3C
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Serotonin Receptors Polymorphisms Are Associated With Cyclic Vomiting Syndrome.
PMID: 39888244
Neurogastroenterol Motil · 2025
1.00
2
Cloning, physical mapping and expression analysis of the human 5-HT3 serotonin receptor-like genes HTR3C, HTR3D and HTR3E.
PMID: 12801637
Gene · 2003
0.90
3
Serotonin type 3 receptor subunit gene polymorphisms associated with psychosomatic symptoms in irritable bowel syndrome: A multicenter retrospective study.
PMID: 35800179
World J Gastroenterol · 2022
0.80
4
Transformer-based deep learning enhances discovery in migraine GWAS.
PMID: 41372126
Nat Commun · 2025
0.70
5
Genome-wide association studies in oesophageal adenocarcinoma and Barrett's oesophagus: a large-scale meta-analysis.
PMID: 27527254
Lancet Oncol · 2016
0.60