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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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HTR3B
5-hydroxytryptamine receptor 3B
Chromosome 11 · 11q23.2
NCBI Gene: 9177Ensembl: ENSG00000149305.8HGNC: HGNC:5298UniProt: O95264
84PubMed Papers
20Diseases
15Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Ion ChannelReceptorTransporter
CLINICAL
FDA Approved Target
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
plasma membranecell surfaceserotonin-activated cation-selective channel complexserotonin receptor signaling pathwayschizophreniairritable bowel syndromepost operative nausea and vomitingmajor depressive disorder
✦AI Summary

HTR3B encodes the B subunit of the serotonin 5-HT3 receptor, a pentameric ligand-gated ion channel that forms serotonin-activated cation-selective channels 1. Upon serotonin binding, HTR3B-containing receptors mediate fast, depolarizing neuronal responses through calcium and monoatomic ion transport. The gene exhibits tissue-specific alternative promoters, with distinct transcription start sites in brain versus intestinal tissues, generating functionally different 5-HT3B isoforms 1. Naturally occurring HTR3B variants significantly alter receptor properties; variants p.Y129S and p.S156R increase maximum serotonin responses, while p.V183I reduces surface expression of heteromeric 5-HT3A/B receptors 2. HTR3B polymorphisms show robust clinical associations: the rs1176744 A allele associates with increased depression risk and executive dysfunction in Chinese populations 3, while rs3782025 correlates with alcoholism comorbid with antisocial behavior and reduced alpha EEG power 4. The rs3758987 polymorphism predicts post-operative vomiting 5 and motion sickness-induced vomiting susceptibility 6. These associations reflect HTR3B's role in serotonergic regulation of mood, behavior, and nausea pathways, positioning the receptor as a potential therapeutic target for psychiatric and gastrointestinal disorders.

Sources cited
1
HTR3B codes for serotonin receptor 3B subunit; tissue-specific alternative promoters in brain and intestine generate transcripts with different 5' structures
PMID: 17010535
2
HTR3B variants p.Y129S and p.S156R increase maximum serotonin responses; p.V183I decreases surface expression of heteromeric 5-HT3A/B receptors
PMID: 18698232
3
HTR3B rs1176744 A allele associates with depression risk and executive dysfunction; C alleles protective in Chinese Han population
PMID: 36849934
4
HTR3B rs3782025 associated with alcoholism with antisocial behavior and low alpha EEG power
PMID: 19185213
5
HTR3B rs3758987 polymorphism associates with post-operative vomiting in Chinese Han patients
PMID: 23464988
6
HTR3B rs3758987 CC+TC genotype increases risk of motion sickness-induced vomiting
PMID: 34948773
Disease Associationsⓘ20
schizophreniaOpen Targets
0.59Moderate
irritable bowel syndromeOpen Targets
0.52Moderate
post operative nausea and vomitingOpen Targets
0.49Moderate
major depressive disorderOpen Targets
0.48Moderate
psychosisOpen Targets
0.46Moderate
gastrointestinal diseaseOpen Targets
0.46Moderate
Nausea and vomitingOpen Targets
0.46Moderate
obesityOpen Targets
0.46Moderate
NauseaOpen Targets
0.44Moderate
prostate carcinomaOpen Targets
0.43Moderate
depressive disorderOpen Targets
0.38Weak
fibromyalgiaOpen Targets
0.37Weak
DiarrheaOpen Targets
0.37Weak
diverticular diseaseOpen Targets
0.30Weak
cancerOpen Targets
0.28Weak
Chemotherapy-induced nausea and vomitingOpen Targets
0.28Weak
dyspepsiaOpen Targets
0.27Weak
ConstipationOpen Targets
0.27Weak
VomitingOpen Targets
0.26Weak
gastric cancerOpen Targets
0.26Weak
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Drug Targets15
AMISULPRIDEApproved
Serotonin (5-HT) receptor antagonist
Nausea and vomiting
CILANSETRONApproved
Serotonin 3 (5-HT3) receptor antagonist
gastrointestinal disease
CLOTHIAPINEApproved
Dopamine D4 receptor antagonist
schizophrenia
DEXFENFLURAMINEApproved
Serotonin (5-HT) receptor agonist
obesity
DEXFENFLURAMINE HYDROCHLORIDEUNKNOWN
Serotonin (5-HT) receptor agonist
FACINICLINE HYDROCHLORIDEPhase II
Serotonin 3 (5-HT3) receptor antagonist
schizophrenia
MOSAPRIDEApproved
Serotonin 4 (5-HT4) receptor agonist
gastrointestinal disease
PUMOSETRAGPhase II/III
Serotonin 3 (5-HT3) receptor partial agonist
irritable bowel syndrome
RAMOSETRONApproved
Serotonin 3 (5-HT3) receptor antagonist
Nausea and vomiting
RAMOSETRON HYDROCHLORIDEApproved
Serotonin 3 (5-HT3) receptor antagonist
irritable bowel syndrome
RENZAPRIDEPhase III
Serotonin 4 (5-HT4) receptor agonist
irritable bowel syndrome
TEDATIOXETINEPhase II
Serotonin 2c (5-HT2c) receptor antagonist
major depressive disorder
TROPISETRONApproved
Serotonin 3 (5-HT3) receptor antagonist
Nausea
ZIMELDINEApproved
Serotonin (5-HT) receptor antagonist
major depressive disorder
ZIMELDINE HYDROCHLORIDEUNKNOWN
Serotonin (5-HT) receptor antagonist
Related Genes
HTR3DProtein interaction99%HTR3CProtein interaction99%HTR3AProtein interaction94%HTR3EProtein interaction88%HTR1EProtein interaction72%GRIN3AProtein interaction72%
Tissue Expression6 tissues
Brain
100%
Liver
3%
Lung
2%
Bone Marrow
2%
Ovary
2%
Heart
0%
Gene Interaction Network
Click a node to explore
HTR3BHTR3DHTR3CHTR3AHTR3EHTR1EGRIN3A
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt O95264
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.21LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.87 [0.64–1.21]
RankingsWhere HTR3B stands among ~20K protein-coding genes
  • #5,670of 20,598
    Most Researched84
  • #178of 1,025
    FDA-Approved Drug Targets9 · top quartile
  • #12,739of 17,882
    Most Constrained (LOEUF)1.21
Genes detectedHTR3B
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Association of HTR3B gene polymorphisms with depression and its executive dysfunction: a case-control study.
PMID: 36849934
BMC Psychiatry · 2023
1.00
2
Tissue-specific alternative promoters of the serotonin receptor gene HTR3B in human brain and intestine.
PMID: 17010535
Gene · 2007
0.90
3
Associations of serotonin receptor gene HTR3A, HTR3B, and HTR3A haplotypes with bipolar disorder in Chinese patients.
PMID: 27706728
Genet Mol Res · 2016
0.80
4
Investigation of the human serotonin receptor gene HTR3B in bipolar affective and schizophrenic patients.
PMID: 15389765
Am J Med Genet B Neuropsychiatr Genet · 2004
0.70
5
Naturally occurring variants in the HTR3B gene significantly alter properties of human heteromeric 5-hydroxytryptamine-3A/B receptors.
PMID: 18698232
Pharmacogenet Genomics · 2008
0.60