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GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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HTR3E
5-hydroxytryptamine receptor 3E
Chromosome 3 · 3q27.1
NCBI Gene: 285242Ensembl: ENSG00000186038.9HGNC: HGNC:24005UniProt: A5X5Y0
20PubMed Papers
20Diseases
14Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Ion ChannelReceptorTransporter
CLINICAL
FDA Approved Target
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
plasma membraneserotonin-gated monoatomic cation channel activityserotonin receptor signaling pathwaytransmembrane transportschizophreniairritable bowel syndromepost operative nausea and vomitingmajor depressive disorder
✦AI Summary

HTR3E encodes the serotonin receptor 3E subunit, which forms serotonin-activated cation-selective ion channels in the Cys-loop superfamily 1. The gene is clustered with HTR3C and HTR3D on chromosome 3 and shows restricted expression predominantly in the colon and intestine 2. During human intestinal development, HTR3E is specifically associated with tuft cells throughout gestation and adulthood, suggesting roles in intestinal development 3. HTR3E functions as part of heteropentameric or homomeric ion channel complexes that mediate fast neuronal depolarization and regulate gastrointestinal motility and secretion 1. The receptor's intracellular amphipathic helix domain contributes to ion permeation and single-channel conductance 4. Clinically, HTR3E variants are significant disease biomarkers. The c.*76G>A variant (rs56109847) is a risk factor specifically for female diarrhea-predominant irritable bowel syndrome (IBS-D) 567. This polymorphism disrupts microRNA-510 binding in the 3'-UTR, leading to HTR3E overexpression and increased IBS-D risk 7. Additionally, HTR3E is among five neurotransmitter receptor genes identified as potential biomarkers for Alzheimer's disease, showing altered expression and associations with immune infiltration patterns 8.

Sources cited
1
HTR3E c.*76G>A variant is associated with female IBS-D; reduced HTR3E transcript levels in sigmoid colon of IBS-D patients
PMID: 36121467
2
HTR3E clustered on chromosome 3q27; expression restricted to colon and intestine
PMID: 12801637
3
HTR3E c.*76G>A polymorphism associated with female D-IBS in Chinese population
PMID: 24257177
4
HTR3E associated with tuft cells throughout human intestinal development from first trimester to adulthood
PMID: 41377494
5
HTR3E identified as potential biomarker for Alzheimer's disease with altered expression patterns
PMID: 38729598
6
HTR3E is part of 5-HT3 cation-selective ion channel family; activation evokes neuronal excitation in central and peripheral nervous systems
PMID: 18761359
7
HTR3E rs56109847 variant disrupts microRNA-510 binding, leading to HTR3E overexpression and increased IBS-D risk
PMID: 26787495
8
HTR3E part of 5-HT3 receptors; intracellular domains determine single-channel conductance properties
PMID: 15157181
Disease Associationsⓘ20
schizophreniaOpen Targets
0.59Moderate
irritable bowel syndromeOpen Targets
0.51Moderate
post operative nausea and vomitingOpen Targets
0.49Moderate
major depressive disorderOpen Targets
0.48Moderate
psychosisOpen Targets
0.46Moderate
Nausea and vomitingOpen Targets
0.46Moderate
obesityOpen Targets
0.46Moderate
NauseaOpen Targets
0.43Moderate
DiarrheaOpen Targets
0.37Weak
depressive disorderOpen Targets
0.37Weak
fibromyalgiaOpen Targets
0.37Weak
gastrointestinal diseaseOpen Targets
0.37Weak
Chemotherapy-induced nausea and vomitingOpen Targets
0.28Weak
cancerOpen Targets
0.28Weak
dyspepsiaOpen Targets
0.27Weak
ConstipationOpen Targets
0.27Weak
VomitingOpen Targets
0.26Weak
gastric cancerOpen Targets
0.26Weak
ileusOpen Targets
0.26Weak
fecal incontinenceOpen Targets
0.18Weak
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Drug Targets14
AMISULPRIDEApproved
Serotonin (5-HT) receptor antagonist
Nausea and vomiting
CLOTHIAPINEApproved
Dopamine D4 receptor antagonist
schizophrenia
DEXFENFLURAMINEApproved
Serotonin (5-HT) receptor agonist
obesity
DEXFENFLURAMINE HYDROCHLORIDEUNKNOWN
Serotonin (5-HT) receptor agonist
FACINICLINE HYDROCHLORIDEPhase II
Serotonin 3 (5-HT3) receptor antagonist
schizophrenia
MOSAPRIDEApproved
Serotonin 4 (5-HT4) receptor agonist
gastrointestinal disease
PUMOSETRAGPhase II/III
Serotonin 3 (5-HT3) receptor partial agonist
irritable bowel syndrome
RAMOSETRONApproved
Serotonin 3 (5-HT3) receptor antagonist
Nausea and vomiting
RAMOSETRON HYDROCHLORIDEApproved
Serotonin 3 (5-HT3) receptor antagonist
irritable bowel syndrome
RENZAPRIDEPhase III
Serotonin 4 (5-HT4) receptor agonist
irritable bowel syndrome
TEDATIOXETINEPhase II
Serotonin 2c (5-HT2c) receptor antagonist
major depressive disorder
TROPISETRONApproved
Serotonin 3 (5-HT3) receptor antagonist
Nausea
ZIMELDINEApproved
Serotonin (5-HT) receptor antagonist
major depressive disorder
ZIMELDINE HYDROCHLORIDEUNKNOWN
Serotonin (5-HT) receptor antagonist
Related Genes
GRIA3Protein interaction98%HTR3BProtein interaction88%HTR3AProtein interaction82%HTR3CProtein interaction79%HTR3DProtein interaction77%LASP1Shared pathway40%
Tissue Expression6 tissues
Brain
100%
Bone Marrow
0%
Ovary
0%
Liver
0%
Lung
0%
Heart
0%
Gene Interaction Network
Click a node to explore
HTR3EGRIA3HTR3BHTR3AHTR3CHTR3DLASP1
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt A5X5Y0
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.13LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.83 [0.63–1.13]
RankingsWhere HTR3E stands among ~20K protein-coding genes
  • #14,170of 20,598
    Most Researched20
  • #199of 1,025
    FDA-Approved Drug Targets8 · top quartile
  • #11,642of 17,882
    Most Constrained (LOEUF)1.13
Genes detectedHTR3E
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
The serotonin receptor 3E variant is a risk factor for female IBS-D.
PMID: 36121467
J Mol Med (Berl) · 2022
1.00
2
Cloning, physical mapping and expression analysis of the human 5-HT3 serotonin receptor-like genes HTR3C, HTR3D and HTR3E.
PMID: 12801637
Gene · 2003
0.90
3
[Association between diarrhea-predominant irritable bowel syndrome and HTR3A, HTR3E gene polymorphism in Yangzhou,Jiangsu province, China].
PMID: 24257177
Zhonghua Liu Xing Bing Xue Za Zhi · 2013
0.80
4
Detection of serotonin and serotonin related gene reveals unique roles in human intestinal epithelial development.
PMID: 41377494
bioRxiv · 2025
0.70
5
Genes related to neurotransmitter receptors as potential biomarkers for Alzheimer's disease.
PMID: 38729598
Neurosci Lett · 2024
0.60