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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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HTR3D
5-hydroxytryptamine receptor 3D
Chromosome 3 · 3q27.1
NCBI Gene: 200909Ensembl: ENSG00000186090.11HGNC: HGNC:24004UniProt: F6WC43
20PubMed Papers
20Diseases
14Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Ion ChannelReceptorTransporter
CLINICAL
FDA Approved Target
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
plasma membraneserotonin-gated monoatomic cation channel activityprotein bindingserotonin receptor signaling pathwayschizophreniairritable bowel syndromepost operative nausea and vomitingmajor depressive disorder
✦AI Summary

HTR3D encodes a subunit of the 5-hydroxytryptamine type-3 (5-HT3) receptor, a serotonin-gated cation-selective ion channel belonging to the Cys-loop superfamily 1. This subunit forms pentameric channel complexes with other HTR3 family members (HTR3A, HTR3B, HTR3C, HTR3E), mediating fast neuronal depolarization upon serotonin activation 1. HTR3D expression is restricted to kidney, colon, and liver tissues, distinguishing it from more broadly distributed HTR3 subunits 2. The channel's conductance properties depend on the intracellular amphipathic helix domain, with HTR3D composition influencing single-channel conductance characteristics 3. Clinically, HTR3D variants associate with multiple conditions. A nonsynonymous variant (p.G36A, rs6443930) correlates with differential chemotherapy-induced nausea and vomiting susceptibility 4. Additionally, HTR3D polymorphisms contribute to childhood acute lymphoblastic leukemia (ALL) susceptibility, with the rs6779545 A allele increasing ALL risk and elevating HTR3D mRNA expression 5. HTR3D variants also show mild associations with primary angle-closure glaucoma in Chinese populations 6. These findings suggest HTR3D genetic variation modulates serotonin signaling relevant to gastrointestinal, hematologic, and ophthalmologic conditions.

Sources cited
1
HTR3D expression is restricted to kidney, colon and liver; HTR3D was cloned and mapped to chromosome 3q27 with other HTR3 genes
PMID: 12801637
2
5-HT3 receptor is a cation-selective ion channel; HTR3D is an additional HTR3 gene expanding molecular diversity; activation evokes neuronal excitation
PMID: 18761359
3
HTR3D subunit contributes to pentameric receptor assembly; intracellular amphipathic helix (HA stretch) is a determinant of single-channel conductance
PMID: 15157181
4
HTR3D variant p.G36A (rs6443930) is associated with chemotherapy-induced vomiting risk in breast cancer patients
PMID: 20602613
5
HTR3D rs6779545 A allele increases childhood acute lymphoblastic leukemia risk and increases HTR3D mRNA expression
PMID: 39322821
6
HTR3D rs12493550 shows mild association with primary angle-closure glaucoma in Chinese populations
PMID: 28813580
Disease Associationsⓘ20
schizophreniaOpen Targets
0.59Moderate
irritable bowel syndromeOpen Targets
0.51Moderate
post operative nausea and vomitingOpen Targets
0.49Moderate
major depressive disorderOpen Targets
0.48Moderate
psychosisOpen Targets
0.46Moderate
Nausea and vomitingOpen Targets
0.46Moderate
obesityOpen Targets
0.46Moderate
NauseaOpen Targets
0.43Moderate
depressive disorderOpen Targets
0.37Weak
DiarrheaOpen Targets
0.37Weak
fibromyalgiaOpen Targets
0.37Weak
gastrointestinal diseaseOpen Targets
0.37Weak
neurodegenerative diseaseOpen Targets
0.33Weak
Chemotherapy-induced nausea and vomitingOpen Targets
0.28Weak
cancerOpen Targets
0.28Weak
dyspepsiaOpen Targets
0.27Weak
ConstipationOpen Targets
0.27Weak
VomitingOpen Targets
0.26Weak
gastric cancerOpen Targets
0.26Weak
ileusOpen Targets
0.26Weak
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Drug Targets14
AMISULPRIDEApproved
Serotonin (5-HT) receptor antagonist
Nausea and vomiting
CLOTHIAPINEApproved
Dopamine D4 receptor antagonist
schizophrenia
DEXFENFLURAMINEApproved
Serotonin (5-HT) receptor agonist
obesity
DEXFENFLURAMINE HYDROCHLORIDEUNKNOWN
Serotonin (5-HT) receptor agonist
FACINICLINE HYDROCHLORIDEPhase II
Serotonin 3 (5-HT3) receptor antagonist
schizophrenia
MOSAPRIDEApproved
Serotonin 4 (5-HT4) receptor agonist
gastrointestinal disease
PUMOSETRAGPhase II/III
Serotonin 3 (5-HT3) receptor partial agonist
irritable bowel syndrome
RAMOSETRONApproved
Serotonin 3 (5-HT3) receptor antagonist
Nausea and vomiting
RAMOSETRON HYDROCHLORIDEApproved
Serotonin 3 (5-HT3) receptor antagonist
irritable bowel syndrome
RENZAPRIDEPhase III
Serotonin 4 (5-HT4) receptor agonist
irritable bowel syndrome
TEDATIOXETINEPhase II
Serotonin 2c (5-HT2c) receptor antagonist
major depressive disorder
TROPISETRONApproved
Serotonin 3 (5-HT3) receptor antagonist
Nausea
ZIMELDINEApproved
Serotonin (5-HT) receptor antagonist
major depressive disorder
ZIMELDINE HYDROCHLORIDEUNKNOWN
Serotonin (5-HT) receptor antagonist
Related Genes
HTR3BProtein interaction99%HTR3AProtein interaction93%HTR3CProtein interaction83%HTR3EProtein interaction77%LASP1Shared pathway40%SFXN4Shared pathway33%
Tissue Expression6 tissues
Lung
0%
Bone Marrow
0%
Ovary
0%
Heart
0%
Liver
0%
Brain
0%
Gene Interaction Network
Click a node to explore
HTR3DHTR3BHTR3AHTR3CHTR3ELASP1SFXN4
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q70Z44
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.28LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.00 [0.79–1.28]
RankingsWhere HTR3D stands among ~20K protein-coding genes
  • #14,169of 20,598
    Most Researched20
  • #198of 1,025
    FDA-Approved Drug Targets8 · top quartile
  • #13,499of 17,882
    Most Constrained (LOEUF)1.28
Genes detectedHTR3D
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Cloning, physical mapping and expression analysis of the human 5-HT3 serotonin receptor-like genes HTR3C, HTR3D and HTR3E.
PMID: 12801637
Gene · 2003
1.00
2
The 5-HT3 receptor--the relationship between structure and function.
PMID: 18761359
Neuropharmacology · 2009
0.90
3
The 5-hydroxytryptamine type 3 (5-HT3) receptor reveals a novel determinant of single-channel conductance.
PMID: 15157181
Biochem Soc Trans · 2004
0.80
4
Pharmacogenetics analysis of serotonin receptor gene variants and clinical response to risperidone in Han Chinese schizophrenic patients.
PMID: 30081060
Neurosci Lett · 2018
0.70
5
Multi-step gene set analysis identified HTR3 family genes involving childhood acute lymphoblastic leukemia susceptibility.
PMID: 39322821
Arch Toxicol · 2025
0.60