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GeneE
6 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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IGDCC3
immunoglobulin superfamily DCC subclass member 3
Chromosome 15 · 15q22.31
NCBI Gene: 9543Ensembl: ENSG00000174498.15HGNC: HGNC:9700UniProt: Q8IVU1
10PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingcell-cell adhesionmembranebreast carcinomacrush injuryinfectious meningitishepatocellular carcinoma
✦AI Summary

IGDCC3 is an immunoglobulin superfamily cell adhesion molecule with roles in cell-cell adhesion and protein binding. IGDCC3 functions as a cell-surface marker enriched in phrenic motor neurons derived from human induced pluripotent stem cells, enabling fluorescence-activated cell sorting (FACS)-based enrichment of hiPSC-phMNs for disease modeling and research 1. This application demonstrates IGDCC3's utility as a selective marker for isolating specific neuronal populations relevant to studying amyotrophic lateral sclerosis and respiratory motor neuron dysfunction. IGDCC3 has emerging clinical significance in cancer biology. It was identified as a hub gene associated with cholangiocarcinoma progression and prognosis through weighted gene co-expression network analysis 2. Additionally, IGDCC3 expression is epigenetically regulated through enhancer-gene methylation patterns that distinguish CpG island methylator phenotype (CIMP) from non-CIMP colorectal cancers, with methylation of enhancer 1944 coordinately controlling IGDCC3 methylation status and potentially serving as a biomarker for CRC classification 3. IGDCC3 methylation is also associated with adipose tissue metabolic dysfunction in obesity, where differential methylation patterns correlate with metabolic inflammation and nicotinamide N-methyltransferase expression 4. These findings suggest IGDCC3 plays multifaceted roles in normal developmental processes and cancer biology through both protein function and epigenetic regulation.

Sources cited
1
IGDCC3 is a cell-surface protein enriched in hiPSC-derived phrenic motor neurons and can be used for FACS-based enrichment of these neurons for ALS research
PMID: 40655414
2
IGDCC3 was identified as one of eight hub genes associated with cholangiocarcinoma progression and prognosis
PMID: 36979826
3
IGDCC3 methylation status is coordinately controlled with enhancer 1944 methylation and differentiates CIMP from non-CIMP colorectal cancers
PMID: 27049830
4
IGDCC3 shows differential methylation in visceral adipose tissue associated with metabolic dysfunction and obesity
PMID: 29688621
⚠Limited data available — This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ20
breast carcinomaOpen Targets
0.04Suggestive
crush injuryOpen Targets
0.04Suggestive
infectious meningitisOpen Targets
0.03Suggestive
hepatocellular carcinomaOpen Targets
0.01Suggestive
breast cancerOpen Targets
0.00Suggestive
cholangiocarcinomaOpen Targets
0.00Suggestive
primitive neuroectodermal tumorOpen Targets
0.00Suggestive
Tetralogy of FallotOpen Targets
0.00Suggestive
neoplasmOpen Targets
0.00Suggestive
Bardet-Biedl syndromeOpen Targets
0.00Suggestive
genetic disorderOpen Targets
0.00Suggestive
colorectal carcinomaOpen Targets
0.00Suggestive
Meckel syndrome, type 1Open Targets
0.00Suggestive
acute myeloid leukemiaOpen Targets
0.00Suggestive
gastric cancerOpen Targets
0.00Suggestive
hereditary breast carcinomaOpen Targets
0.00Suggestive
melanomaOpen Targets
0.00Suggestive
nonpapillary renal cell carcinomaOpen Targets
0.00Suggestive
ThymomaOpen Targets
0.00Suggestive
urinary bladder cancerOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
LPPShared pathway100%VSIG10L2Shared pathway100%IGSF5Shared pathway100%TMEM47Shared pathway100%VEZTShared pathway100%FBLIM1Shared pathway100%
Tissue Expression6 tissues
Ovary
100%
Brain
70%
Heart
7%
Bone Marrow
5%
Liver
2%
Lung
0%
Gene Interaction Network
Click a node to explore
IGDCC3LPPVSIG10L2IGSF5TMEM47VEZTFBLIM1
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q8IVU1
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.86LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.67 [0.54–0.86]
RankingsWhere IGDCC3 stands among ~20K protein-coding genes
  • #17,073of 20,598
    Most Researched10
  • #7,476of 17,882
    Most Constrained (LOEUF)0.86
Genes detectedIGDCC3
Sources retrieved6 papers
Response time—
📄 Sources
6▼
1
Characteristic Analysis of Featured Genes Associated with Cholangiocarcinoma Progression.
PMID: 36979826
Biomedicines · 2023
1.00
2
Derivation and Culture of Enriched Phrenic-Like Motor Neurons From Human iPSCs.
PMID: 40655414
Bio Protoc · 2025
0.83
3
Distinct epigenetic signatures elucidate enhancer-gene relationships that delineate CIMP and non-CIMP colorectal cancers.
PMID: 27049830
Oncotarget · 2016
0.67
4
An Epigenetic Signature in Adipose Tissue Is Linked to Nicotinamide N-Methyltransferase Gene Expression.
PMID: 29688621
Mol Nutr Food Res · 2018
0.50
5
Extracellular matrix signature identifies breast cancer subgroups with different clinical outcome.
PMID: 18044827
J Pathol · 2008
0.33